Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 KRT19P2-202ENST00000557173 1012 ntBASIC5.22□□□□□ -1.57
SYNE1Q8NF91 AC099522.2-201ENST00000607001 744 ntBASIC5.22□□□□□ -1.57
SYNE1Q8NF91 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 PRAL-201ENST00000624952 3286 ntBASIC5.22□□□□□ -1.57
SYNE1Q8NF91 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 AC092171.3-201ENST00000610122 2651 ntBASIC5.22□□□□□ -1.57
SYNE1Q8NF91 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 AC122714.2-201ENST00000502787 707 ntBASIC5.22□□□□□ -1.57
SYNE1Q8NF91 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC5.22□□□□□ -1.57
SYNE1Q8NF91 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 PAUPAR-201ENST00000630360 2965 ntBASIC5.21□□□□□ -1.57
SYNE1Q8NF91 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SYNE1Q8NF91 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 CD99-202ENST00000381180 530 ntTSL 2 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 SMN2-210ENST00000511812 867 ntTSL 2 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 AC004790.2-201ENST00000623588 572 ntBASIC5.21□□□□□ -1.58
SYNE1Q8NF91 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC5.21□□□□□ -1.58
SYNE1Q8NF91 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms