Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.08□□□□□ -0.15
CCDC28AQ8IWP9 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28AQ8IWP9 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28AQ8IWP9 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.08□□□□□ -0.15
CCDC28AQ8IWP9 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28AQ8IWP9 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
CCDC28AQ8IWP9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28AQ8IWP9 KRT8P9-201ENST00000558927 1449 ntBASIC14.08□□□□□ -0.15
CCDC28AQ8IWP9 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 SP100-208ENST00000427101 1922 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 AC005912.2-201ENST00000619492 2400 ntBASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 ESRRAP1-201ENST00000400596 1257 ntBASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 MMAB-206ENST00000540016 945 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 COL6A4P2-202ENST00000504443 2753 ntBASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28AQ8IWP9 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 AC016396.2-201ENST00000562575 1417 ntBASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 CICP8-201ENST00000455800 2813 ntBASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 AC239809.2-201ENST00000415381 517 ntBASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 Z85996.1-201ENST00000494644 937 ntBASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 CD99P1-205ENST00000527459 561 ntBASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 IRX5-204ENST00000560154 879 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 AC069544.1-201ENST00000609399 999 ntBASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 LINC01101-201ENST00000622953 1884 ntBASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC28AQ8IWP9 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms