Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 RBPMS2P1-201ENST00000437762 623 ntBASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 AC105020.1-201ENST00000435356 2205 ntBASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC60Q8IWA6 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 MIR346-201ENST00000362234 95 ntBASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 KRT18P34-201ENST00000488218 1270 ntBASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 AP002490.2-201ENST00000524791 560 ntBASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 AC025678.2-201ENST00000562061 970 ntBASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 Z92544.3-201ENST00000624747 417 ntBASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC60Q8IWA6 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 SPDYE14P-201ENST00000442619 822 ntBASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC60Q8IWA6 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms