Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AC002310.6-201ENST00000624451 1377 ntBASIC10.44□□□□□ -0.74
LINC00643Q86TS7 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ENSA-205ENST00000361532 792 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 PBX1-209ENST00000485769 834 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AL160286.2-201ENST00000567150 934 ntBASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AL591742.1-201ENST00000604433 565 ntBASIC10.44□□□□□ -0.74
LINC00643Q86TS7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AC099521.3-201ENST00000624251 2938 ntBASIC10.44□□□□□ -0.74
LINC00643Q86TS7 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 GPI-205ENST00000586425 1799 ntTSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 COCH-203ENST00000460581 2688 ntTSL 2 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 KRT8P50-201ENST00000562022 1438 ntBASIC10.43□□□□□ -0.74
LINC00643Q86TS7 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 GCK-205ENST00000437084 1385 ntTSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 KRT18P68-201ENST00000392293 1000 ntBASIC10.43□□□□□ -0.74
LINC00643Q86TS7 AC103834.1-201ENST00000520383 144 ntBASIC10.43□□□□□ -0.74
LINC00643Q86TS7 C2orf69P4-201ENST00000565394 541 ntBASIC10.43□□□□□ -0.74
LINC00643Q86TS7 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 GXYLT1P5-201ENST00000614548 1189 ntBASIC10.43□□□□□ -0.74
LINC00643Q86TS7 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 AP003680.1-201ENST00000598970 3660 ntBASIC10.43□□□□□ -0.74
LINC00643Q86TS7 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms