Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
USP54Q70EL1 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
USP54Q70EL1 AC141586.5-201ENST00000624546 2050 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC21.98■■□□□ 1.11
USP54Q70EL1 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
USP54Q70EL1 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC21.98■■□□□ 1.11
USP54Q70EL1 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC21.98■■□□□ 1.11
USP54Q70EL1 RHOA-206ENST00000454011 889 ntTSL 2 BASIC21.98■■□□□ 1.11
USP54Q70EL1 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.98■■□□□ 1.11
USP54Q70EL1 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.98■■□□□ 1.11
USP54Q70EL1 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.98■■□□□ 1.11
USP54Q70EL1 AC119751.2-201ENST00000504529 210 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 HILS1-202ENST00000545329 423 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 AC074044.1-201ENST00000609673 707 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 RPSAP52-203ENST00000622976 1023 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC21.97■■□□□ 1.11
USP54Q70EL1 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC21.97■■□□□ 1.11
USP54Q70EL1 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC21.97■■□□□ 1.11
USP54Q70EL1 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
USP54Q70EL1 PGF-202ENST00000405431 666 ntTSL 5 BASIC21.97■■□□□ 1.11
USP54Q70EL1 KRT17P7-201ENST00000451704 1104 ntBASIC21.97■■□□□ 1.11
USP54Q70EL1 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC21.97■■□□□ 1.11
USP54Q70EL1 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC21.97■■□□□ 1.11
USP54Q70EL1 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC21.97■■□□□ 1.11
USP54Q70EL1 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC21.97■■□□□ 1.11
USP54Q70EL1 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC21.97■■□□□ 1.11
USP54Q70EL1 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC21.97■■□□□ 1.11
USP54Q70EL1 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 AL023806.1-201ENST00000603994 1649 ntBASIC21.97■■□□□ 1.11
USP54Q70EL1 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
USP54Q70EL1 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
USP54Q70EL1 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.97■■□□□ 1.11
USP54Q70EL1 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
USP54Q70EL1 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC21.96■■□□□ 1.11
USP54Q70EL1 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
USP54Q70EL1 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.96■■□□□ 1.11
USP54Q70EL1 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
USP54Q70EL1 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
USP54Q70EL1 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
USP54Q70EL1 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
USP54Q70EL1 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
USP54Q70EL1 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC21.96■■□□□ 1.11
USP54Q70EL1 ATP5G2P4-201ENST00000442175 420 ntBASIC21.96■■□□□ 1.11
USP54Q70EL1 AC132938.2-201ENST00000579188 680 ntBASIC21.96■■□□□ 1.11
USP54Q70EL1 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
USP54Q70EL1 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
USP54Q70EL1 AL591163.1-201ENST00000641757 987 ntBASIC21.96■■□□□ 1.11
USP54Q70EL1 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
USP54Q70EL1 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC21.96■■□□□ 1.11
USP54Q70EL1 HLA-A-202ENST00000376806 1854 ntBASIC21.96■■□□□ 1.11
USP54Q70EL1 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC21.96■■□□□ 1.11
USP54Q70EL1 AC006538.1-201ENST00000567905 1585 ntBASIC21.96■■□□□ 1.11
USP54Q70EL1 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.11
USP54Q70EL1 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
USP54Q70EL1 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC21.95■■□□□ 1.1
USP54Q70EL1 RAD18-204ENST00000418463 563 ntTSL 4 BASIC21.95■■□□□ 1.1
USP54Q70EL1 AC098850.1-201ENST00000419919 790 ntBASIC21.95■■□□□ 1.1
USP54Q70EL1 RAD18-205ENST00000421052 582 ntTSL 3 BASIC21.95■■□□□ 1.1
USP54Q70EL1 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC21.95■■□□□ 1.1
USP54Q70EL1 GNAQP1-201ENST00000444815 1067 ntBASIC21.95■■□□□ 1.1
USP54Q70EL1 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC21.95■■□□□ 1.1
USP54Q70EL1 DOC2GP-202ENST00000514950 1163 ntBASIC21.95■■□□□ 1.1
USP54Q70EL1 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
USP54Q70EL1 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC21.95■■□□□ 1.1
USP54Q70EL1 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
USP54Q70EL1 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC21.95■■□□□ 1.1
USP54Q70EL1 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC21.95■■□□□ 1.1
USP54Q70EL1 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
USP54Q70EL1 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC21.95■■□□□ 1.1
USP54Q70EL1 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.95■■□□□ 1.1
USP54Q70EL1 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
USP54Q70EL1 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
USP54Q70EL1 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
USP54Q70EL1 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
USP54Q70EL1 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
USP54Q70EL1 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC21.95■■□□□ 1.1
USP54Q70EL1 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC21.95■■□□□ 1.1
USP54Q70EL1 TEX48-202ENST00000612244 662 ntTSL 3 BASIC21.95■■□□□ 1.1
USP54Q70EL1 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.94■■□□□ 1.1
USP54Q70EL1 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC21.94■■□□□ 1.1
USP54Q70EL1 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC21.94■■□□□ 1.1
USP54Q70EL1 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC21.94■■□□□ 1.1
USP54Q70EL1 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
USP54Q70EL1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 ARSEP1-201ENST00000420443 635 ntBASIC21.94■■□□□ 1.1
USP54Q70EL1 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC21.94■■□□□ 1.1
USP54Q70EL1 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms