Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 AL162727.3-201ENST00000635661 2787 ntBASIC19.15■□□□□ 0.66
ATL3Q6DD88 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.15■□□□□ 0.66
ATL3Q6DD88 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 AC006449.6-201ENST00000612330 2296 ntBASIC19.15■□□□□ 0.66
ATL3Q6DD88 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 AC005412.3-201ENST00000580309 715 ntBASIC19.15■□□□□ 0.66
ATL3Q6DD88 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.15■□□□□ 0.66
ATL3Q6DD88 AP001350.2-201ENST00000625104 1094 ntBASIC19.15■□□□□ 0.66
ATL3Q6DD88 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATL3Q6DD88 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.15■□□□□ 0.66
ATL3Q6DD88 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.14■□□□□ 0.66
ATL3Q6DD88 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
ATL3Q6DD88 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
ATL3Q6DD88 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
ATL3Q6DD88 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
ATL3Q6DD88 PCGF3-213ENST00000620529 1899 ntBASIC19.14■□□□□ 0.65
ATL3Q6DD88 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 ARMC10P1-201ENST00000313754 855 ntBASIC19.14■□□□□ 0.65
ATL3Q6DD88 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 HCG4-201ENST00000418983 998 ntBASIC19.14■□□□□ 0.65
ATL3Q6DD88 PMS2P1-201ENST00000431037 1228 ntBASIC19.14■□□□□ 0.65
ATL3Q6DD88 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 AC107918.2-201ENST00000530817 355 ntBASIC19.14■□□□□ 0.65
ATL3Q6DD88 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 AC087641.1-201ENST00000557561 1021 ntBASIC19.14■□□□□ 0.65
ATL3Q6DD88 AC025062.2-201ENST00000605477 670 ntBASIC19.14■□□□□ 0.65
ATL3Q6DD88 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 AC006504.4-201ENST00000592118 1568 ntBASIC19.14■□□□□ 0.65
ATL3Q6DD88 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.14■□□□□ 0.65
ATL3Q6DD88 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATL3Q6DD88 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATL3Q6DD88 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
ATL3Q6DD88 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATL3Q6DD88 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATL3Q6DD88 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.13■□□□□ 0.65
ATL3Q6DD88 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ATL3Q6DD88 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATL3Q6DD88 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
ATL3Q6DD88 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATL3Q6DD88 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATL3Q6DD88 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATL3Q6DD88 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms