Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 AC084346.2-201ENST00000607097 949 ntBASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 AC108860.2-201ENST00000562760 2183 ntBASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 AC011495.1-201ENST00000498085 584 ntBASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC88AQ3V6T2 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 AC104989.1-201ENST00000519711 778 ntBASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 CTBP2P3-201ENST00000585629 1255 ntBASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 GPR182-203ENST00000622922 591 ntBASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 AL133338.1-201ENST00000565695 1517 ntBASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 AC099548.2-209ENST00000480264 625 ntBASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC88AQ3V6T2 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 AL355994.2-201ENST00000447882 704 ntBASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 SRD5A3P1-201ENST00000603021 949 ntBASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 LINC02012-201ENST00000608206 1725 ntBASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 AC068587.10-201ENST00000641210 219 ntBASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms