Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC091304.2-201ENST00000564639 760 ntBASIC19.44■□□□□ 0.7
SF3A1Q15459 PRELID1P1-202ENST00000567272 903 ntBASIC19.44■□□□□ 0.7
SF3A1Q15459 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.44■□□□□ 0.7
SF3A1Q15459 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.44■□□□□ 0.7
SF3A1Q15459 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SF3A1Q15459 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.44■□□□□ 0.7
SF3A1Q15459 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SF3A1Q15459 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.44■□□□□ 0.7
SF3A1Q15459 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SF3A1Q15459 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.43■□□□□ 0.7
SF3A1Q15459 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.43■□□□□ 0.7
SF3A1Q15459 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.43■□□□□ 0.7
SF3A1Q15459 AKR1C7P-201ENST00000305623 895 ntBASIC19.43■□□□□ 0.7
SF3A1Q15459 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.43■□□□□ 0.7
SF3A1Q15459 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SF3A1Q15459 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.43■□□□□ 0.7
SF3A1Q15459 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.43■□□□□ 0.7
SF3A1Q15459 AC008608.2-201ENST00000606089 416 ntBASIC19.43■□□□□ 0.7
SF3A1Q15459 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.43■□□□□ 0.7
SF3A1Q15459 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
SF3A1Q15459 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SF3A1Q15459 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.43■□□□□ 0.7
SF3A1Q15459 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SF3A1Q15459 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.42■□□□□ 0.7
SF3A1Q15459 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.42■□□□□ 0.7
SF3A1Q15459 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.42■□□□□ 0.7
SF3A1Q15459 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SF3A1Q15459 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.42■□□□□ 0.7
SF3A1Q15459 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.42■□□□□ 0.7
SF3A1Q15459 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.42■□□□□ 0.7
SF3A1Q15459 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.42■□□□□ 0.7
SF3A1Q15459 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
SF3A1Q15459 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.42■□□□□ 0.7
SF3A1Q15459 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 TERC-201ENST00000602385 541 ntBASIC19.42■□□□□ 0.7
SF3A1Q15459 AL139424.1-201ENST00000607572 797 ntBASIC19.42■□□□□ 0.7
SF3A1Q15459 REXO1L6P-202ENST00000619970 1078 ntBASIC19.42■□□□□ 0.7
SF3A1Q15459 AC012313.10-201ENST00000623509 926 ntBASIC19.42■□□□□ 0.7
SF3A1Q15459 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.42■□□□□ 0.7
SF3A1Q15459 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SF3A1Q15459 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.42■□□□□ 0.7
SF3A1Q15459 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.42■□□□□ 0.7
SF3A1Q15459 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SF3A1Q15459 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SF3A1Q15459 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC19.42■□□□□ 0.7
SF3A1Q15459 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC19.41■□□□□ 0.7
SF3A1Q15459 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SF3A1Q15459 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SF3A1Q15459 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SF3A1Q15459 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.41■□□□□ 0.7
SF3A1Q15459 AC006449.5-201ENST00000610658 2098 ntBASIC19.41■□□□□ 0.7
SF3A1Q15459 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SF3A1Q15459 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.41■□□□□ 0.7
SF3A1Q15459 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SF3A1Q15459 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SF3A1Q15459 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.41■□□□□ 0.7
SF3A1Q15459 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SF3A1Q15459 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.41■□□□□ 0.7
SF3A1Q15459 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.41■□□□□ 0.7
SF3A1Q15459 MTDHP4-201ENST00000600287 670 ntBASIC19.41■□□□□ 0.7
SF3A1Q15459 AL589182.2-201ENST00000619332 1049 ntBASIC19.41■□□□□ 0.7
SF3A1Q15459 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SF3A1Q15459 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.41■□□□□ 0.7
SF3A1Q15459 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SF3A1Q15459 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SF3A1Q15459 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms