Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.43□□□□□ -0.1
CHD3Q12873 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.43□□□□□ -0.1
CHD3Q12873 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CHD3Q12873 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.43□□□□□ -0.1
CHD3Q12873 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.43□□□□□ -0.1
CHD3Q12873 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.43□□□□□ -0.1
CHD3Q12873 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.43□□□□□ -0.1
CHD3Q12873 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.43□□□□□ -0.1
CHD3Q12873 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
CHD3Q12873 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CHD3Q12873 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC14.43□□□□□ -0.1
CHD3Q12873 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.43□□□□□ -0.1
CHD3Q12873 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC14.43□□□□□ -0.1
CHD3Q12873 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.43□□□□□ -0.1
CHD3Q12873 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.43□□□□□ -0.1
CHD3Q12873 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.43□□□□□ -0.1
CHD3Q12873 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.42□□□□□ -0.1
CHD3Q12873 AC092474.2-201ENST00000424288 719 ntBASIC14.42□□□□□ -0.1
CHD3Q12873 AC023141.5-201ENST00000458585 616 ntBASIC14.42□□□□□ -0.1
CHD3Q12873 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.42□□□□□ -0.1
CHD3Q12873 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 AC023141.13-201ENST00000604991 943 ntBASIC14.42□□□□□ -0.1
CHD3Q12873 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.42□□□□□ -0.1
CHD3Q12873 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.42□□□□□ -0.1
CHD3Q12873 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CHD3Q12873 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CHD3Q12873 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CHD3Q12873 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 AC005915.1-201ENST00000624912 2018 ntBASIC14.42□□□□□ -0.1
CHD3Q12873 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.42□□□□□ -0.1
CHD3Q12873 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.42□□□□□ -0.1
CHD3Q12873 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CHD3Q12873 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 AC087641.1-201ENST00000557561 1021 ntBASIC14.42□□□□□ -0.1
CHD3Q12873 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.42□□□□□ -0.1
CHD3Q12873 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.42□□□□□ -0.1
CHD3Q12873 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.42□□□□□ -0.1
CHD3Q12873 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
CHD3Q12873 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHD3Q12873 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
CHD3Q12873 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms