Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 PTCHD3P3-201ENST00000403073 906 ntBASIC16.21■□□□□ 0.19
HMGCS1Q01581 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 AL391005.1-201ENST00000623953 2435 ntBASIC16.21■□□□□ 0.19
HMGCS1Q01581 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
HMGCS1Q01581 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.21■□□□□ 0.18
HMGCS1Q01581 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HMGCS1Q01581 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.21■□□□□ 0.18
HMGCS1Q01581 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HMGCS1Q01581 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 CYP2T1P-202ENST00000641596 2535 ntBASIC16.2■□□□□ 0.18
HMGCS1Q01581 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 AC026691.1-201ENST00000602502 2017 ntBASIC16.2■□□□□ 0.18
HMGCS1Q01581 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 HLA-J-202ENST00000469281 1241 ntBASIC16.2■□□□□ 0.18
HMGCS1Q01581 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 AF238378.1-201ENST00000526806 358 ntBASIC16.2■□□□□ 0.18
HMGCS1Q01581 KRT126P-201ENST00000549467 1181 ntBASIC16.2■□□□□ 0.18
HMGCS1Q01581 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 AC013467.2-201ENST00000605472 835 ntBASIC16.2■□□□□ 0.18
HMGCS1Q01581 AC025062.2-201ENST00000605477 670 ntBASIC16.2■□□□□ 0.18
HMGCS1Q01581 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 TOP3BP1-201ENST00000420768 1380 ntBASIC16.2■□□□□ 0.18
HMGCS1Q01581 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 AC006504.4-201ENST00000592118 1568 ntBASIC16.2■□□□□ 0.18
HMGCS1Q01581 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HMGCS1Q01581 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGCS1Q01581 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGCS1Q01581 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGCS1Q01581 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGCS1Q01581 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGCS1Q01581 PI4KAP1-204ENST00000612579 1703 ntBASIC16.19■□□□□ 0.18
HMGCS1Q01581 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGCS1Q01581 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGCS1Q01581 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGCS1Q01581 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HMGCS1Q01581 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGCS1Q01581 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HMGCS1Q01581 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGCS1Q01581 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGCS1Q01581 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGCS1Q01581 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGCS1Q01581 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGCS1Q01581 ELK2BP-201ENST00000415014 1224 ntBASIC16.19■□□□□ 0.18
HMGCS1Q01581 AL450487.1-201ENST00000426799 995 ntBASIC16.19■□□□□ 0.18
HMGCS1Q01581 AC087163.2-201ENST00000457299 853 ntBASIC16.19■□□□□ 0.18
HMGCS1Q01581 SCARNA2-201ENST00000458748 420 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms