Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
CX3CL1P78423 RPS2P28-201ENST00000314255 741 ntBASIC13.58□□□□□ -0.24
CX3CL1P78423 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CX3CL1P78423 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC13.58□□□□□ -0.24
CX3CL1P78423 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.58□□□□□ -0.24
CX3CL1P78423 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC13.58□□□□□ -0.24
CX3CL1P78423 AC018712.1-201ENST00000455767 687 ntBASIC13.58□□□□□ -0.24
CX3CL1P78423 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CX3CL1P78423 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.58□□□□□ -0.24
CX3CL1P78423 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.58□□□□□ -0.24
CX3CL1P78423 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.58□□□□□ -0.24
CX3CL1P78423 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
CX3CL1P78423 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.58□□□□□ -0.24
CX3CL1P78423 AC104692.2-201ENST00000603054 253 ntBASIC13.58□□□□□ -0.24
CX3CL1P78423 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC13.58□□□□□ -0.24
CX3CL1P78423 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
CX3CL1P78423 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CX3CL1P78423 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CX3CL1P78423 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CX3CL1P78423 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CX3CL1P78423 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
CX3CL1P78423 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.58□□□□□ -0.24
CX3CL1P78423 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.58□□□□□ -0.24
CX3CL1P78423 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CL1P78423 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 AC092068.3-201ENST00000587894 2016 ntBASIC13.57□□□□□ -0.24
CX3CL1P78423 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.57□□□□□ -0.24
CX3CL1P78423 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 HNRNPRP1-201ENST00000453465 1695 ntBASIC13.57□□□□□ -0.24
CX3CL1P78423 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 AL603756.1-201ENST00000606511 2163 ntBASIC13.57□□□□□ -0.24
CX3CL1P78423 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 HNRNPDP1-201ENST00000439535 754 ntBASIC13.57□□□□□ -0.24
CX3CL1P78423 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.57□□□□□ -0.24
CX3CL1P78423 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 AP002469.2-201ENST00000531724 424 ntBASIC13.57□□□□□ -0.24
CX3CL1P78423 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13.57□□□□□ -0.24
CX3CL1P78423 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.57□□□□□ -0.24
CX3CL1P78423 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 AC006504.4-201ENST00000592118 1568 ntBASIC13.57□□□□□ -0.24
CX3CL1P78423 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.57□□□□□ -0.24
CX3CL1P78423 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC13.57□□□□□ -0.24
CX3CL1P78423 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CX3CL1P78423 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CL1P78423 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CL1P78423 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CL1P78423 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms