Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.69□□□□□ -0.22
LMO4P61968 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 FAM220BP-201ENST00000377689 816 ntBASIC13.69□□□□□ -0.22
LMO4P61968 HLA-H-201ENST00000383620 1096 ntBASIC13.69□□□□□ -0.22
LMO4P61968 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC13.69□□□□□ -0.22
LMO4P61968 TSPY16P-201ENST00000449843 468 ntBASIC13.69□□□□□ -0.22
LMO4P61968 COX20P2-201ENST00000452636 358 ntBASIC13.69□□□□□ -0.22
LMO4P61968 UGT1A2P-201ENST00000454886 866 ntBASIC13.69□□□□□ -0.22
LMO4P61968 AL512638.1-201ENST00000457493 794 ntBASIC13.69□□□□□ -0.22
LMO4P61968 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC13.69□□□□□ -0.22
LMO4P61968 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.69□□□□□ -0.22
LMO4P61968 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC13.69□□□□□ -0.22
LMO4P61968 AC007967.4-201ENST00000614700 386 ntBASIC13.69□□□□□ -0.22
LMO4P61968 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.69□□□□□ -0.22
LMO4P61968 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC13.69□□□□□ -0.22
LMO4P61968 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.69□□□□□ -0.22
LMO4P61968 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.69□□□□□ -0.22
LMO4P61968 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 AL645728.1-201ENST00000366221 2101 ntBASIC13.69□□□□□ -0.22
LMO4P61968 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.69□□□□□ -0.22
LMO4P61968 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMO4P61968 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC13.68□□□□□ -0.22
LMO4P61968 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
LMO4P61968 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
LMO4P61968 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
LMO4P61968 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC13.68□□□□□ -0.22
LMO4P61968 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
LMO4P61968 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.68□□□□□ -0.22
LMO4P61968 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.68□□□□□ -0.22
LMO4P61968 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.68□□□□□ -0.22
LMO4P61968 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.68□□□□□ -0.22
LMO4P61968 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.68□□□□□ -0.22
LMO4P61968 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.68□□□□□ -0.22
LMO4P61968 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
LMO4P61968 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC13.68□□□□□ -0.22
LMO4P61968 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.68□□□□□ -0.22
LMO4P61968 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 AC098859.1-201ENST00000502915 1238 ntBASIC13.68□□□□□ -0.22
LMO4P61968 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC13.68□□□□□ -0.22
LMO4P61968 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.68□□□□□ -0.22
LMO4P61968 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.68□□□□□ -0.22
LMO4P61968 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.68□□□□□ -0.22
LMO4P61968 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
LMO4P61968 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
LMO4P61968 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
LMO4P61968 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
LMO4P61968 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
LMO4P61968 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.68□□□□□ -0.22
LMO4P61968 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
LMO4P61968 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LMO4P61968 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC13.67□□□□□ -0.22
LMO4P61968 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
LMO4P61968 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
LMO4P61968 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LMO4P61968 AL512652.2-201ENST00000625156 1716 ntBASIC13.67□□□□□ -0.22
LMO4P61968 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LMO4P61968 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LMO4P61968 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
LMO4P61968 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
LMO4P61968 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LMO4P61968 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.67□□□□□ -0.22
LMO4P61968 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LMO4P61968 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms