Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.55■□□□□ 0.24
SRP54P61011 LINC00896-202ENST00000609602 2128 ntBASIC16.55■□□□□ 0.24
SRP54P61011 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
SRP54P61011 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.55■□□□□ 0.24
SRP54P61011 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.55■□□□□ 0.24
SRP54P61011 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.55■□□□□ 0.24
SRP54P61011 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SRP54P61011 AL391005.1-201ENST00000623953 2435 ntBASIC16.55■□□□□ 0.24
SRP54P61011 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 AKAP8P1-201ENST00000434743 1349 ntBASIC16.55■□□□□ 0.24
SRP54P61011 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 AL139400.1-201ENST00000366220 510 ntBASIC16.55■□□□□ 0.24
SRP54P61011 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.55■□□□□ 0.24
SRP54P61011 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 AC023141.5-201ENST00000458585 616 ntBASIC16.55■□□□□ 0.24
SRP54P61011 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.55■□□□□ 0.24
SRP54P61011 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.55■□□□□ 0.24
SRP54P61011 RFPL4AP1-201ENST00000530883 850 ntBASIC16.55■□□□□ 0.24
SRP54P61011 AC109635.5-201ENST00000533593 962 ntBASIC16.55■□□□□ 0.24
SRP54P61011 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.55■□□□□ 0.24
SRP54P61011 AL135744.1-201ENST00000565098 629 ntBASIC16.55■□□□□ 0.24
SRP54P61011 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.55■□□□□ 0.24
SRP54P61011 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.55■□□□□ 0.24
SRP54P61011 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SRP54P61011 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.55■□□□□ 0.24
SRP54P61011 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.55■□□□□ 0.24
SRP54P61011 PKD1P5-201ENST00000532415 10291 ntBASIC16.55■□□□□ 0.24
SRP54P61011 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SRP54P61011 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SRP54P61011 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.55■□□□□ 0.24
SRP54P61011 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SRP54P61011 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.54■□□□□ 0.24
SRP54P61011 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SRP54P61011 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SRP54P61011 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
SRP54P61011 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SRP54P61011 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SRP54P61011 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SRP54P61011 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SRP54P61011 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SRP54P61011 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.54■□□□□ 0.24
SRP54P61011 AC092474.2-201ENST00000424288 719 ntBASIC16.54■□□□□ 0.24
SRP54P61011 AC005237.2-201ENST00000434368 219 ntBASIC16.54■□□□□ 0.24
SRP54P61011 AL592309.1-201ENST00000443127 649 ntBASIC16.54■□□□□ 0.24
SRP54P61011 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.54■□□□□ 0.24
SRP54P61011 AC079140.1-201ENST00000508039 487 ntBASIC16.54■□□□□ 0.24
SRP54P61011 AC243562.1-201ENST00000560672 389 ntBASIC16.54■□□□□ 0.24
SRP54P61011 AC004449.1-201ENST00000564240 433 ntBASIC16.54■□□□□ 0.24
SRP54P61011 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.54■□□□□ 0.24
SRP54P61011 AC093028.1-201ENST00000622998 982 ntBASIC16.54■□□□□ 0.24
SRP54P61011 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SRP54P61011 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SRP54P61011 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.54■□□□□ 0.24
SRP54P61011 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.54■□□□□ 0.24
SRP54P61011 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
SRP54P61011 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
SRP54P61011 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SRP54P61011 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.53■□□□□ 0.24
SRP54P61011 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
SRP54P61011 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SRP54P61011 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.53■□□□□ 0.24
SRP54P61011 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.53■□□□□ 0.24
SRP54P61011 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms