Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PKNOX1P55347 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 AC105917.1-201ENST00000506637 2539 ntBASIC16.53■□□□□ 0.24
PKNOX1P55347 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PKNOX1P55347 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
PKNOX1P55347 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 ATP5G2P1-201ENST00000433580 426 ntBASIC16.53■□□□□ 0.24
PKNOX1P55347 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PKNOX1P55347 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.53■□□□□ 0.24
PKNOX1P55347 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.53■□□□□ 0.24
PKNOX1P55347 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.53■□□□□ 0.24
PKNOX1P55347 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.53■□□□□ 0.24
PKNOX1P55347 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.53■□□□□ 0.24
PKNOX1P55347 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.53■□□□□ 0.24
PKNOX1P55347 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.53■□□□□ 0.24
PKNOX1P55347 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PKNOX1P55347 AL391256.1-201ENST00000443260 1855 ntBASIC16.52■□□□□ 0.24
PKNOX1P55347 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PKNOX1P55347 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PKNOX1P55347 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.52■□□□□ 0.24
PKNOX1P55347 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PKNOX1P55347 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PKNOX1P55347 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
PKNOX1P55347 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PKNOX1P55347 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PKNOX1P55347 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PKNOX1P55347 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PKNOX1P55347 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PKNOX1P55347 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.52■□□□□ 0.24
PKNOX1P55347 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.52■□□□□ 0.24
PKNOX1P55347 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.52■□□□□ 0.24
PKNOX1P55347 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.52■□□□□ 0.24
PKNOX1P55347 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.52■□□□□ 0.24
PKNOX1P55347 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.52■□□□□ 0.24
PKNOX1P55347 AL591684.3-201ENST00000605187 298 ntBASIC16.52■□□□□ 0.24
PKNOX1P55347 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PKNOX1P55347 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
PKNOX1P55347 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PKNOX1P55347 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.52■□□□□ 0.23
PKNOX1P55347 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.52■□□□□ 0.23
PKNOX1P55347 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PKNOX1P55347 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.52■□□□□ 0.23
PKNOX1P55347 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.52■□□□□ 0.23
PKNOX1P55347 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
PKNOX1P55347 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.52■□□□□ 0.23
PKNOX1P55347 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
PKNOX1P55347 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.52■□□□□ 0.23
PKNOX1P55347 LINC00895-201ENST00000629028 1637 ntBASIC16.52■□□□□ 0.23
PKNOX1P55347 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PKNOX1P55347 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PKNOX1P55347 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
PKNOX1P55347 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 AC024909.3-201ENST00000611513 2257 ntBASIC16.51■□□□□ 0.23
PKNOX1P55347 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.51■□□□□ 0.23
PKNOX1P55347 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms