Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.36■□□□□ 0.37
NEK3P51956 AC064836.3-201ENST00000607928 673 ntBASIC17.36■□□□□ 0.37
NEK3P51956 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
NEK3P51956 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NEK3P51956 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
NEK3P51956 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.35■□□□□ 0.37
NEK3P51956 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.35■□□□□ 0.37
NEK3P51956 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.35■□□□□ 0.37
NEK3P51956 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.35■□□□□ 0.37
NEK3P51956 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
NEK3P51956 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
NEK3P51956 CRYGEP-201ENST00000412192 528 ntBASIC17.35■□□□□ 0.37
NEK3P51956 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.35■□□□□ 0.37
NEK3P51956 GGTLC5P-201ENST00000617623 998 ntBASIC17.35■□□□□ 0.37
NEK3P51956 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.35■□□□□ 0.37
NEK3P51956 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
NEK3P51956 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 AC026691.1-201ENST00000602502 2017 ntBASIC17.35■□□□□ 0.37
NEK3P51956 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
NEK3P51956 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NEK3P51956 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NEK3P51956 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NEK3P51956 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.34■□□□□ 0.37
NEK3P51956 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NEK3P51956 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
NEK3P51956 BX842568.4-201ENST00000421222 227 ntBASIC17.34■□□□□ 0.37
NEK3P51956 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.34■□□□□ 0.37
NEK3P51956 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NEK3P51956 AC092865.5-201ENST00000545435 363 ntBASIC17.34■□□□□ 0.37
NEK3P51956 AC124947.2-201ENST00000547118 1133 ntBASIC17.34■□□□□ 0.37
NEK3P51956 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.34■□□□□ 0.37
NEK3P51956 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NEK3P51956 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.34■□□□□ 0.37
NEK3P51956 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.34■□□□□ 0.37
NEK3P51956 AC006449.5-201ENST00000610658 2098 ntBASIC17.34■□□□□ 0.37
NEK3P51956 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
NEK3P51956 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
NEK3P51956 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NEK3P51956 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
NEK3P51956 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NEK3P51956 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEK3P51956 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
NEK3P51956 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.33■□□□□ 0.37
NEK3P51956 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEK3P51956 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.33■□□□□ 0.37
NEK3P51956 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
NEK3P51956 AC092068.3-201ENST00000587894 2016 ntBASIC17.33■□□□□ 0.37
NEK3P51956 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.33■□□□□ 0.37
NEK3P51956 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
NEK3P51956 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
NEK3P51956 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEK3P51956 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEK3P51956 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEK3P51956 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEK3P51956 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEK3P51956 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 PCDHA1-201ENST00000378133 2726 ntBASIC17.33■□□□□ 0.36
NEK3P51956 AL590787.1-201ENST00000568856 1315 ntBASIC17.33■□□□□ 0.36
NEK3P51956 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.33■□□□□ 0.36
NEK3P51956 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms