Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.74■□□□□ 0.43
LIG3P49916 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.74■□□□□ 0.43
LIG3P49916 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.74■□□□□ 0.43
LIG3P49916 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.74■□□□□ 0.43
LIG3P49916 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
LIG3P49916 AC116407.2-201ENST00000613639 860 ntBASIC17.74■□□□□ 0.43
LIG3P49916 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.74■□□□□ 0.43
LIG3P49916 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.74■□□□□ 0.43
LIG3P49916 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
LIG3P49916 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
LIG3P49916 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LIG3P49916 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.73■□□□□ 0.43
LIG3P49916 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
LIG3P49916 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 AL160237.2-201ENST00000556165 472 ntBASIC17.73■□□□□ 0.43
LIG3P49916 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.73■□□□□ 0.43
LIG3P49916 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.73■□□□□ 0.43
LIG3P49916 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.73■□□□□ 0.43
LIG3P49916 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.73■□□□□ 0.43
LIG3P49916 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.73■□□□□ 0.43
LIG3P49916 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.73■□□□□ 0.43
LIG3P49916 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 AP001269.4-201ENST00000609611 512 ntBASIC17.73■□□□□ 0.43
LIG3P49916 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LIG3P49916 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.73■□□□□ 0.43
LIG3P49916 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LIG3P49916 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIG3P49916 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
LIG3P49916 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.72■□□□□ 0.43
LIG3P49916 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LIG3P49916 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
LIG3P49916 AC009949.1-201ENST00000623048 1830 ntBASIC17.72■□□□□ 0.43
LIG3P49916 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LIG3P49916 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LIG3P49916 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.72■□□□□ 0.43
LIG3P49916 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
LIG3P49916 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.72■□□□□ 0.43
LIG3P49916 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.72■□□□□ 0.43
LIG3P49916 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.72■□□□□ 0.43
LIG3P49916 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 AC008608.2-201ENST00000606089 416 ntBASIC17.72■□□□□ 0.43
LIG3P49916 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.72■□□□□ 0.43
LIG3P49916 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
LIG3P49916 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.72■□□□□ 0.43
LIG3P49916 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIG3P49916 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.71■□□□□ 0.43
LIG3P49916 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms