Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
BRCA1P38398 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
BRCA1P38398 APOA1-205ENST00000375329 927 ntTSL 2 BASIC20.03■□□□□ 0.8
BRCA1P38398 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC20.03■□□□□ 0.8
BRCA1P38398 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC20.03■□□□□ 0.8
BRCA1P38398 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC20.03■□□□□ 0.8
BRCA1P38398 AP000812.2-201ENST00000538934 718 ntBASIC20.03■□□□□ 0.8
BRCA1P38398 KRT90P-201ENST00000549264 1064 ntBASIC20.03■□□□□ 0.8
BRCA1P38398 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC20.03■□□□□ 0.8
BRCA1P38398 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC20.03■□□□□ 0.8
BRCA1P38398 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC20.03■□□□□ 0.8
BRCA1P38398 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC20.03■□□□□ 0.8
BRCA1P38398 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC20.03■□□□□ 0.8
BRCA1P38398 ABBA01031663.1-201ENST00000635630 790 ntBASIC20.03■□□□□ 0.8
BRCA1P38398 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.03■□□□□ 0.8
BRCA1P38398 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BRCA1P38398 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BRCA1P38398 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.02■□□□□ 0.8
BRCA1P38398 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BRCA1P38398 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC20.02■□□□□ 0.8
BRCA1P38398 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
BRCA1P38398 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
BRCA1P38398 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BRCA1P38398 AC104596.2-201ENST00000512793 793 ntBASIC20.02■□□□□ 0.8
BRCA1P38398 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BRCA1P38398 KRT8P22-201ENST00000562317 1415 ntBASIC20.02■□□□□ 0.79
BRCA1P38398 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
BRCA1P38398 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
BRCA1P38398 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.02■□□□□ 0.79
BRCA1P38398 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
BRCA1P38398 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.79
BRCA1P38398 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
BRCA1P38398 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC20.01■□□□□ 0.79
BRCA1P38398 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
BRCA1P38398 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC20.01■□□□□ 0.79
BRCA1P38398 TDH-203ENST00000531764 1110 ntBASIC20.01■□□□□ 0.79
BRCA1P38398 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
BRCA1P38398 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC20.01■□□□□ 0.79
BRCA1P38398 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
BRCA1P38398 AL589702.1-201ENST00000641229 1509 ntBASIC20.01■□□□□ 0.79
BRCA1P38398 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
BRCA1P38398 AC012317.2-201ENST00000623305 2251 ntBASIC20.01■□□□□ 0.79
BRCA1P38398 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BRCA1P38398 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
BRCA1P38398 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
BRCA1P38398 TUBB8P12-201ENST00000308911 1335 ntBASIC20.01■□□□□ 0.79
BRCA1P38398 TUBB7P-202ENST00000428444 1305 ntBASIC20.01■□□□□ 0.79
BRCA1P38398 TUBB8P7-204ENST00000567960 1332 ntBASIC20.01■□□□□ 0.79
BRCA1P38398 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
BRCA1P38398 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.01■□□□□ 0.79
BRCA1P38398 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BRCA1P38398 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.01■□□□□ 0.79
BRCA1P38398 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
BRCA1P38398 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.01■□□□□ 0.79
BRCA1P38398 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BRCA1P38398 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.01■□□□□ 0.79
BRCA1P38398 RPL13AP20-201ENST00000459725 609 ntBASIC20.01■□□□□ 0.79
BRCA1P38398 RN7SL399P-201ENST00000471648 279 ntBASIC20.01■□□□□ 0.79
BRCA1P38398 COG4-212ENST00000564653 590 ntTSL 5 BASIC20.01■□□□□ 0.79
BRCA1P38398 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.01■□□□□ 0.79
BRCA1P38398 RETN-203ENST00000629642 400 ntTSL 5 BASIC20.01■□□□□ 0.79
BRCA1P38398 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC20■□□□□ 0.79
BRCA1P38398 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC20■□□□□ 0.79
BRCA1P38398 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
BRCA1P38398 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC20■□□□□ 0.79
BRCA1P38398 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20■□□□□ 0.79
BRCA1P38398 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20■□□□□ 0.79
BRCA1P38398 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
BRCA1P38398 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20■□□□□ 0.79
BRCA1P38398 KRT8P39-201ENST00000396270 1433 ntBASIC20■□□□□ 0.79
BRCA1P38398 FXNP2-201ENST00000411625 547 ntBASIC20■□□□□ 0.79
BRCA1P38398 EEF1DP4-201ENST00000446006 880 ntBASIC20■□□□□ 0.79
BRCA1P38398 FAM86HP-204ENST00000513466 959 ntBASIC20■□□□□ 0.79
BRCA1P38398 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
BRCA1P38398 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC20■□□□□ 0.79
BRCA1P38398 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 AL049840.4-201ENST00000602422 811 ntBASIC20■□□□□ 0.79
BRCA1P38398 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
BRCA1P38398 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20■□□□□ 0.79
BRCA1P38398 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
BRCA1P38398 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20■□□□□ 0.79
BRCA1P38398 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms