Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
RFX1P22670 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.3■□□□□ 0.52
RFX1P22670 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
RFX1P22670 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.3■□□□□ 0.52
RFX1P22670 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
RFX1P22670 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.3■□□□□ 0.52
RFX1P22670 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.29■□□□□ 0.52
RFX1P22670 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 AL391256.1-201ENST00000443260 1855 ntBASIC18.29■□□□□ 0.52
RFX1P22670 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RFX1P22670 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
RFX1P22670 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
RFX1P22670 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
RFX1P22670 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.29■□□□□ 0.52
RFX1P22670 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
RFX1P22670 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.29■□□□□ 0.52
RFX1P22670 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.29■□□□□ 0.52
RFX1P22670 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.29■□□□□ 0.52
RFX1P22670 AL645939.2-201ENST00000427340 991 ntBASIC18.29■□□□□ 0.52
RFX1P22670 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 AC244107.1-201ENST00000442033 332 ntBASIC18.29■□□□□ 0.52
RFX1P22670 PAWRP1-201ENST00000451083 565 ntBASIC18.29■□□□□ 0.52
RFX1P22670 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.29■□□□□ 0.52
RFX1P22670 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.29■□□□□ 0.52
RFX1P22670 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RFX1P22670 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 AC004706.3-202ENST00000621574 984 ntBASIC18.29■□□□□ 0.52
RFX1P22670 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.29■□□□□ 0.52
RFX1P22670 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
RFX1P22670 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.29■□□□□ 0.52
RFX1P22670 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX1P22670 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
RFX1P22670 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.28■□□□□ 0.52
RFX1P22670 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.28■□□□□ 0.52
RFX1P22670 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX1P22670 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX1P22670 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX1P22670 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX1P22670 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
RFX1P22670 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX1P22670 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.28■□□□□ 0.52
RFX1P22670 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 AC254562.1-201ENST00000417586 456 ntBASIC18.28■□□□□ 0.52
RFX1P22670 CNN2P11-201ENST00000429351 262 ntBASIC18.28■□□□□ 0.52
RFX1P22670 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.28■□□□□ 0.52
RFX1P22670 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX1P22670 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.28■□□□□ 0.52
RFX1P22670 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.28■□□□□ 0.52
RFX1P22670 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RFX1P22670 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.28■□□□□ 0.52
RFX1P22670 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
RFX1P22670 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.28■□□□□ 0.52
RFX1P22670 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX1P22670 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.28■□□□□ 0.52
RFX1P22670 HLA-A-202ENST00000376806 1854 ntBASIC18.28■□□□□ 0.52
RFX1P22670 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 AL603756.1-201ENST00000606511 2163 ntBASIC18.28■□□□□ 0.52
RFX1P22670 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX1P22670 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms