Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.13■□□□□ 0.33
COL9A1P20849 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 RPL17P11-201ENST00000417593 544 ntBASIC17.13■□□□□ 0.33
COL9A1P20849 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.13■□□□□ 0.33
COL9A1P20849 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.13■□□□□ 0.33
COL9A1P20849 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.13■□□□□ 0.33
COL9A1P20849 DOC2GP-202ENST00000514950 1163 ntBASIC17.13■□□□□ 0.33
COL9A1P20849 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.13■□□□□ 0.33
COL9A1P20849 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.13■□□□□ 0.33
COL9A1P20849 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.13■□□□□ 0.33
COL9A1P20849 RN7SL371P-201ENST00000578099 267 ntBASIC17.13■□□□□ 0.33
COL9A1P20849 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.13■□□□□ 0.33
COL9A1P20849 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.13■□□□□ 0.33
COL9A1P20849 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.13■□□□□ 0.33
COL9A1P20849 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
COL9A1P20849 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.13■□□□□ 0.33
COL9A1P20849 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.13■□□□□ 0.33
COL9A1P20849 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.13■□□□□ 0.33
COL9A1P20849 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.12■□□□□ 0.33
COL9A1P20849 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL9A1P20849 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
COL9A1P20849 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 AC135050.7-201ENST00000624508 2218 ntBASIC17.12■□□□□ 0.33
COL9A1P20849 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL9A1P20849 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 FO681548.1-201ENST00000455617 1132 ntBASIC17.12■□□□□ 0.33
COL9A1P20849 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.12■□□□□ 0.33
COL9A1P20849 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 AC105129.2-201ENST00000559536 390 ntBASIC17.12■□□□□ 0.33
COL9A1P20849 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.12■□□□□ 0.33
COL9A1P20849 AC060766.1-201ENST00000590824 627 ntBASIC17.12■□□□□ 0.33
COL9A1P20849 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL9A1P20849 AC018529.1-201ENST00000613063 361 ntBASIC17.12■□□□□ 0.33
COL9A1P20849 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
COL9A1P20849 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 AC133963.1-201ENST00000504166 1679 ntBASIC17.12■□□□□ 0.33
COL9A1P20849 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL9A1P20849 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL9A1P20849 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL9A1P20849 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL9A1P20849 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL9A1P20849 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL9A1P20849 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL9A1P20849 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL9A1P20849 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.12■□□□□ 0.33
COL9A1P20849 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL9A1P20849 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL9A1P20849 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.11■□□□□ 0.33
COL9A1P20849 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL9A1P20849 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.11■□□□□ 0.33
COL9A1P20849 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.11■□□□□ 0.33
COL9A1P20849 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.11■□□□□ 0.33
COL9A1P20849 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.11■□□□□ 0.33
COL9A1P20849 MYCLP2-201ENST00000449268 967 ntBASIC17.11■□□□□ 0.33
COL9A1P20849 TMEM198B-204ENST00000484016 896 ntBASIC17.11■□□□□ 0.33
COL9A1P20849 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC17.11■□□□□ 0.33
COL9A1P20849 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC17.11■□□□□ 0.33
COL9A1P20849 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.11■□□□□ 0.33
COL9A1P20849 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.11■□□□□ 0.33
COL9A1P20849 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.11■□□□□ 0.33
COL9A1P20849 AC015936.2-201ENST00000593177 259 ntBASIC17.11■□□□□ 0.33
COL9A1P20849 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.11■□□□□ 0.33
COL9A1P20849 HLA-C-210ENST00000640219 976 ntBASIC17.11■□□□□ 0.33
COL9A1P20849 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL9A1P20849 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.11■□□□□ 0.33
COL9A1P20849 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL9A1P20849 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.11■□□□□ 0.33
COL9A1P20849 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL9A1P20849 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL9A1P20849 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL9A1P20849 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms