Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGA1P17096 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGA1P17096 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGA1P17096 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
HMGA1P17096 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGA1P17096 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HMGA1P17096 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.28■□□□□ 0.36
HMGA1P17096 FAM220BP-201ENST00000377689 816 ntBASIC17.28■□□□□ 0.36
HMGA1P17096 HLA-H-201ENST00000383620 1096 ntBASIC17.28■□□□□ 0.36
HMGA1P17096 UGT1A2P-201ENST00000454886 866 ntBASIC17.28■□□□□ 0.36
HMGA1P17096 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGA1P17096 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGA1P17096 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGA1P17096 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGA1P17096 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGA1P17096 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 AC007967.4-201ENST00000614700 386 ntBASIC17.28■□□□□ 0.36
HMGA1P17096 AL390754.1-201ENST00000619088 582 ntBASIC17.28■□□□□ 0.36
HMGA1P17096 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGA1P17096 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGA1P17096 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.28■□□□□ 0.36
HMGA1P17096 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HMGA1P17096 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGA1P17096 AC005332.8-201ENST00000622750 2735 ntBASIC17.27■□□□□ 0.36
HMGA1P17096 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
HMGA1P17096 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGA1P17096 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGA1P17096 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGA1P17096 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGA1P17096 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGA1P17096 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGA1P17096 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGA1P17096 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGA1P17096 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGA1P17096 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGA1P17096 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGA1P17096 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGA1P17096 AC098859.1-201ENST00000502915 1238 ntBASIC17.27■□□□□ 0.36
HMGA1P17096 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGA1P17096 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGA1P17096 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGA1P17096 AC003101.2-201ENST00000612557 442 ntBASIC17.27■□□□□ 0.36
HMGA1P17096 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGA1P17096 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGA1P17096 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGA1P17096 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGA1P17096 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HMGA1P17096 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
HMGA1P17096 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGA1P17096 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGA1P17096 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGA1P17096 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.27■□□□□ 0.35
HMGA1P17096 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGA1P17096 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.27■□□□□ 0.35
HMGA1P17096 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGA1P17096 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.27■□□□□ 0.35
HMGA1P17096 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGA1P17096 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 AL031731.1-201ENST00000642131 2094 ntBASIC17.26■□□□□ 0.35
HMGA1P17096 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HMGA1P17096 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGA1P17096 MIR661-201ENST00000384842 89 ntBASIC17.26■□□□□ 0.35
HMGA1P17096 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGA1P17096 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGA1P17096 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGA1P17096 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.26■□□□□ 0.35
HMGA1P17096 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HMGA1P17096 IGHV3-42-201ENST00000520410 361 ntBASIC17.26■□□□□ 0.35
HMGA1P17096 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGA1P17096 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.26■□□□□ 0.35
HMGA1P17096 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
HMGA1P17096 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HMGA1P17096 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGA1P17096 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 AL603756.1-201ENST00000606511 2163 ntBASIC17.26■□□□□ 0.35
HMGA1P17096 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms