Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
COL6A3P12111 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.16■□□□□ 0.34
COL6A3P12111 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.16■□□□□ 0.34
COL6A3P12111 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.16■□□□□ 0.34
COL6A3P12111 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.16■□□□□ 0.34
COL6A3P12111 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.16■□□□□ 0.34
COL6A3P12111 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.16■□□□□ 0.34
COL6A3P12111 PRKXP1-201ENST00000561423 1122 ntBASIC17.16■□□□□ 0.34
COL6A3P12111 AC135983.4-201ENST00000564116 1262 ntBASIC17.16■□□□□ 0.34
COL6A3P12111 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
COL6A3P12111 AL133499.1-201ENST00000596207 608 ntBASIC17.16■□□□□ 0.34
COL6A3P12111 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A3P12111 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A3P12111 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
COL6A3P12111 AL353726.2-201ENST00000623259 884 ntBASIC17.16■□□□□ 0.34
COL6A3P12111 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.16■□□□□ 0.34
COL6A3P12111 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.15■□□□□ 0.34
COL6A3P12111 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL6A3P12111 AL442647.2-201ENST00000429864 857 ntBASIC17.15■□□□□ 0.34
COL6A3P12111 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.15■□□□□ 0.34
COL6A3P12111 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC17.15■□□□□ 0.34
COL6A3P12111 TIMM17BP1-201ENST00000545713 516 ntBASIC17.15■□□□□ 0.34
COL6A3P12111 AC073352.2-201ENST00000609385 439 ntBASIC17.15■□□□□ 0.34
COL6A3P12111 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.15■□□□□ 0.34
COL6A3P12111 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL6A3P12111 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 AF254983.2-201ENST00000612331 135 ntBASIC17.15■□□□□ 0.34
COL6A3P12111 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.15■□□□□ 0.34
COL6A3P12111 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.15■□□□□ 0.34
COL6A3P12111 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL6A3P12111 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.15■□□□□ 0.34
COL6A3P12111 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A3P12111 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL6A3P12111 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL6A3P12111 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.14■□□□□ 0.34
COL6A3P12111 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL6A3P12111 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.14■□□□□ 0.34
COL6A3P12111 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL6A3P12111 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.14■□□□□ 0.34
COL6A3P12111 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
COL6A3P12111 AC016694.1-201ENST00000434179 700 ntBASIC17.14■□□□□ 0.33
COL6A3P12111 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL6A3P12111 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC17.14■□□□□ 0.33
COL6A3P12111 AC104982.3-201ENST00000581995 514 ntBASIC17.14■□□□□ 0.33
COL6A3P12111 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A3P12111 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
COL6A3P12111 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.14■□□□□ 0.33
COL6A3P12111 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A3P12111 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A3P12111 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A3P12111 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A3P12111 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL6A3P12111 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL6A3P12111 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A3P12111 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.14■□□□□ 0.33
COL6A3P12111 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.14■□□□□ 0.33
COL6A3P12111 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A3P12111 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms