Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
HMGB1P09429 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.78■□□□□ 0.76
HMGB1P09429 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.78■□□□□ 0.76
HMGB1P09429 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.78■□□□□ 0.76
HMGB1P09429 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.78■□□□□ 0.76
HMGB1P09429 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.78■□□□□ 0.76
HMGB1P09429 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
HMGB1P09429 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.78■□□□□ 0.76
HMGB1P09429 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.78■□□□□ 0.76
HMGB1P09429 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 AL645728.2-201ENST00000641974 660 ntBASIC19.78■□□□□ 0.76
HMGB1P09429 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.78■□□□□ 0.76
HMGB1P09429 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
HMGB1P09429 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.78■□□□□ 0.76
HMGB1P09429 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.78■□□□□ 0.76
HMGB1P09429 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGB1P09429 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB1P09429 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
HMGB1P09429 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
HMGB1P09429 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB1P09429 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.77■□□□□ 0.76
HMGB1P09429 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB1P09429 GGT4P-201ENST00000623672 1708 ntBASIC19.77■□□□□ 0.76
HMGB1P09429 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
HMGB1P09429 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB1P09429 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.77■□□□□ 0.76
HMGB1P09429 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGB1P09429 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB1P09429 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.77■□□□□ 0.76
HMGB1P09429 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.77■□□□□ 0.76
HMGB1P09429 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGB1P09429 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGB1P09429 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGB1P09429 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.77■□□□□ 0.76
HMGB1P09429 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.77■□□□□ 0.76
HMGB1P09429 Z83851.2-201ENST00000609564 659 ntBASIC19.77■□□□□ 0.76
HMGB1P09429 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.77■□□□□ 0.76
HMGB1P09429 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB1P09429 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
HMGB1P09429 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGB1P09429 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGB1P09429 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
HMGB1P09429 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HMGB1P09429 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
HMGB1P09429 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HMGB1P09429 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.77■□□□□ 0.75
HMGB1P09429 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HMGB1P09429 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
HMGB1P09429 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
HMGB1P09429 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.76■□□□□ 0.75
HMGB1P09429 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HMGB1P09429 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.76■□□□□ 0.75
HMGB1P09429 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGB1P09429 HCG4B-203ENST00000450128 991 ntBASIC19.76■□□□□ 0.75
HMGB1P09429 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HMGB1P09429 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.76■□□□□ 0.75
HMGB1P09429 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGB1P09429 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.76■□□□□ 0.75
HMGB1P09429 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
HMGB1P09429 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
HMGB1P09429 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGB1P09429 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGB1P09429 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HMGB1P09429 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGB1P09429 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGB1P09429 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGB1P09429 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGB1P09429 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGB1P09429 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 ALOX12P2-203ENST00000570921 1945 ntBASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms