Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.65
SHROOM4Q9ULL8 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC31.64■■■□□ 2.65
SHROOM4Q9ULL8 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
SHROOM4Q9ULL8 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 AC009407.1-201ENST00000568958 598 ntBASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC31.63■■■□□ 2.65
SHROOM4Q9ULL8 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 NAA38-206ENST00000576384 424 ntTSL 2 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 RNA5-8SN1-201ENST00000610460 153 ntBASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 RNA5-8SN5-202ENST00000612463 153 ntBASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 AC018529.1-201ENST00000613063 361 ntBASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 RNA5-8SN4-201ENST00000613359 153 ntBASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 RNA5-8SN5-201ENST00000619471 153 ntBASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 AC141586.5-201ENST00000624546 2050 ntBASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 NARF-206ENST00000457415 1668 ntTSL 5 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 RHBDF1P1-201ENST00000427504 1941 ntBASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC31.62■■■□□ 2.65
SHROOM4Q9ULL8 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 AL138918.1-201ENST00000568306 659 ntBASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 CYP2A7P1-201ENST00000595391 815 ntBASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 AC073389.1-201ENST00000595595 795 ntBASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 AC092068.3-201ENST00000587894 2016 ntBASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 AC087499.5-201ENST00000452760 1342 ntBASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 AC106820.2-201ENST00000563775 3264 ntBASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC31.61■■■□□ 2.65
SHROOM4Q9ULL8 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 AC112492.5-201ENST00000421897 457 ntBASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 AC105233.2-201ENST00000523697 349 ntBASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 AF228730.5-201ENST00000530288 346 ntBASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC31.6■■■□□ 2.65
SHROOM4Q9ULL8 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 KRT8P49-201ENST00000604166 1432 ntBASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC31.59■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms