Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HPS4Q9NQG7 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.39■□□□□ 0.37
HPS4Q9NQG7 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HPS4Q9NQG7 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HPS4Q9NQG7 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HPS4Q9NQG7 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HPS4Q9NQG7 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 AL353732.1-201ENST00000569618 1459 ntBASIC17.38■□□□□ 0.37
HPS4Q9NQG7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 AL512356.2-201ENST00000546955 174 ntBASIC17.38■□□□□ 0.37
HPS4Q9NQG7 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 AC051619.7-201ENST00000568314 623 ntBASIC17.38■□□□□ 0.37
HPS4Q9NQG7 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 AP001059.3-201ENST00000619053 235 ntBASIC17.38■□□□□ 0.37
HPS4Q9NQG7 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HPS4Q9NQG7 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 EGFEM1P-202ENST00000431685 1563 ntBASIC17.37■□□□□ 0.37
HPS4Q9NQG7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 SLC25A1P3-201ENST00000395415 828 ntBASIC17.37■□□□□ 0.37
HPS4Q9NQG7 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 AC092474.2-201ENST00000424288 719 ntBASIC17.37■□□□□ 0.37
HPS4Q9NQG7 CNN2P2-201ENST00000443536 909 ntBASIC17.37■□□□□ 0.37
HPS4Q9NQG7 CNN2P3-201ENST00000450201 906 ntBASIC17.37■□□□□ 0.37
HPS4Q9NQG7 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 AC109635.5-201ENST00000533593 962 ntBASIC17.37■□□□□ 0.37
HPS4Q9NQG7 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 AL136317.3-201ENST00000618497 906 ntBASIC17.37■□□□□ 0.37
HPS4Q9NQG7 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HPS4Q9NQG7 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 FER1L4-210ENST00000615531 5998 ntBASIC17.36■□□□□ 0.37
HPS4Q9NQG7 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 SLC22A20-204ENST00000530038 1673 ntBASIC17.36■□□□□ 0.37
HPS4Q9NQG7 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 RBPMS2P1-201ENST00000437762 623 ntBASIC17.36■□□□□ 0.37
HPS4Q9NQG7 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 AC069262.1-201ENST00000539058 672 ntBASIC17.36■□□□□ 0.37
HPS4Q9NQG7 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.36■□□□□ 0.37
HPS4Q9NQG7 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms