Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 YBX2P1-201ENST00000394192 760 ntBASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 BX842568.4-201ENST00000421222 227 ntBASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 MCCD1P2-201ENST00000423228 335 ntBASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 AC074386.1-202ENST00000463561 864 ntBASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 HCG4-201ENST00000418983 998 ntBASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 DNAJB3-201ENST00000446806 729 ntBASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 AL031432.2-201ENST00000566714 459 ntBASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 AL928711.1-201ENST00000570165 459 ntBASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 MPDU1-223ENST00000582151 728 ntBASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 AC023511.2-201ENST00000618803 211 ntBASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 AC060834.1-201ENST00000443027 2032 ntBASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.68■□□□□ 0.26
TRIM39Q9HCM9 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 AL121761.2-201ENST00000598007 1648 ntBASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 AC012569.1-201ENST00000591191 1524 ntBASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 AC092865.5-201ENST00000545435 363 ntBASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms