Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 AC113404.2-201ENST00000507884 177 ntBASIC16.91■□□□□ 0.3
TRIM4Q9C037 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.91■□□□□ 0.3
TRIM4Q9C037 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM4Q9C037 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
TRIM4Q9C037 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 UPF3AP3-201ENST00000420996 769 ntBASIC16.9■□□□□ 0.3
TRIM4Q9C037 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.9■□□□□ 0.3
TRIM4Q9C037 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.9■□□□□ 0.3
TRIM4Q9C037 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM4Q9C037 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TRIM4Q9C037 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRIM4Q9C037 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
TRIM4Q9C037 AL355312.1-201ENST00000407115 2176 ntBASIC16.89■□□□□ 0.3
TRIM4Q9C037 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.89■□□□□ 0.3
TRIM4Q9C037 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.89■□□□□ 0.3
TRIM4Q9C037 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRIM4Q9C037 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRIM4Q9C037 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
TRIM4Q9C037 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRIM4Q9C037 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
TRIM4Q9C037 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM4Q9C037 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM4Q9C037 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM4Q9C037 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
TRIM4Q9C037 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TRIM4Q9C037 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM4Q9C037 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
TRIM4Q9C037 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
TRIM4Q9C037 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM4Q9C037 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM4Q9C037 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms