Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13□□□□□ -0.33
CCDC140Q96MF4 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13□□□□□ -0.33
CCDC140Q96MF4 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CCDC140Q96MF4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CCDC140Q96MF4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 AL590627.1-203ENST00000421194 1026 ntBASIC13□□□□□ -0.33
CCDC140Q96MF4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13□□□□□ -0.33
CCDC140Q96MF4 HCG4B-203ENST00000450128 991 ntBASIC13□□□□□ -0.33
CCDC140Q96MF4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13□□□□□ -0.33
CCDC140Q96MF4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13□□□□□ -0.33
CCDC140Q96MF4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13□□□□□ -0.33
CCDC140Q96MF4 AC034105.1-201ENST00000563488 319 ntBASIC13□□□□□ -0.33
CCDC140Q96MF4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC13□□□□□ -0.33
CCDC140Q96MF4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CCDC140Q96MF4 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13□□□□□ -0.33
CCDC140Q96MF4 AP001350.2-201ENST00000625104 1094 ntBASIC13□□□□□ -0.33
CCDC140Q96MF4 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC13□□□□□ -0.33
CCDC140Q96MF4 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13□□□□□ -0.33
CCDC140Q96MF4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC13□□□□□ -0.33
CCDC140Q96MF4 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
CCDC140Q96MF4 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13□□□□□ -0.33
CCDC140Q96MF4 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
CCDC140Q96MF4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 CDK2AP2P3-201ENST00000422476 372 ntBASIC12.99□□□□□ -0.33
CCDC140Q96MF4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 AC120114.3-201ENST00000611923 658 ntBASIC12.99□□□□□ -0.33
CCDC140Q96MF4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 AC010507.1-201ENST00000633895 436 ntBASIC12.99□□□□□ -0.33
CCDC140Q96MF4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
CCDC140Q96MF4 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 AC012569.1-201ENST00000591191 1524 ntBASIC12.98□□□□□ -0.33
CCDC140Q96MF4 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 KRT8P39-201ENST00000396270 1433 ntBASIC12.98□□□□□ -0.33
CCDC140Q96MF4 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms