Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.18■□□□□ 0.18
VMP1Q96GC9 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.18■□□□□ 0.18
VMP1Q96GC9 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VMP1Q96GC9 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 AL049840.3-201ENST00000602669 611 ntBASIC16.17■□□□□ 0.18
VMP1Q96GC9 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 LINC00554-201ENST00000564841 3011 ntBASIC16.17■□□□□ 0.18
VMP1Q96GC9 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VMP1Q96GC9 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VMP1Q96GC9 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.16■□□□□ 0.18
VMP1Q96GC9 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VMP1Q96GC9 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms