Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 AC105233.2-201ENST00000523697 349 ntBASIC17.03■□□□□ 0.32
CHFRQ96EP1 AF228730.5-201ENST00000530288 346 ntBASIC17.03■□□□□ 0.32
CHFRQ96EP1 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 AC021097.1-201ENST00000607902 574 ntBASIC17.03■□□□□ 0.32
CHFRQ96EP1 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHFRQ96EP1 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CHFRQ96EP1 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHFRQ96EP1 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CHFRQ96EP1 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHFRQ96EP1 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CHFRQ96EP1 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CHFRQ96EP1 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 AC244107.1-201ENST00000442033 332 ntBASIC17.02■□□□□ 0.32
CHFRQ96EP1 CRB3P1-201ENST00000449338 276 ntBASIC17.02■□□□□ 0.32
CHFRQ96EP1 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.02■□□□□ 0.32
CHFRQ96EP1 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 AC027369.6-201ENST00000525520 931 ntBASIC17.02■□□□□ 0.32
CHFRQ96EP1 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 AC003101.2-201ENST00000612557 442 ntBASIC17.02■□□□□ 0.32
CHFRQ96EP1 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 AC073592.8-201ENST00000624126 511 ntBASIC17.02■□□□□ 0.32
CHFRQ96EP1 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHFRQ96EP1 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CHFRQ96EP1 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
CHFRQ96EP1 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CHFRQ96EP1 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
CHFRQ96EP1 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CHFRQ96EP1 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
CHFRQ96EP1 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CHFRQ96EP1 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 AL671710.1-201ENST00000610245 2349 ntBASIC17.01■□□□□ 0.31
CHFRQ96EP1 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 AC007967.4-201ENST00000614700 386 ntBASIC17.01■□□□□ 0.31
CHFRQ96EP1 AL138828.2-201ENST00000615812 383 ntBASIC17.01■□□□□ 0.31
CHFRQ96EP1 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.01■□□□□ 0.31
CHFRQ96EP1 AC092053.1-201ENST00000605787 1936 ntBASIC17.01■□□□□ 0.31
CHFRQ96EP1 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHFRQ96EP1 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CHFRQ96EP1 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
CHFRQ96EP1 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHFRQ96EP1 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CHFRQ96EP1 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHFRQ96EP1 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17■□□□□ 0.31
CHFRQ96EP1 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHFRQ96EP1 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHFRQ96EP1 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17■□□□□ 0.31
CHFRQ96EP1 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CHFRQ96EP1 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17■□□□□ 0.31
CHFRQ96EP1 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHFRQ96EP1 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms