Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 UXT-AS1-201ENST00000590504 1525 ntBASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.84■□□□□ 0.29
HDDC3Q8N4P3 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDDC3Q8N4P3 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
HDDC3Q8N4P3 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDDC3Q8N4P3 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDDC3Q8N4P3 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDDC3Q8N4P3 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
HDDC3Q8N4P3 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDDC3Q8N4P3 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDDC3Q8N4P3 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 AC002472.2-201ENST00000442739 958 ntBASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 KLF2P3-201ENST00000451977 1087 ntBASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 CYP2A7P1-201ENST00000595391 815 ntBASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDDC3Q8N4P3 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 AC107890.1-201ENST00000422478 521 ntBASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 AC125807.1-201ENST00000483097 614 ntBASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 MIR3909-201ENST00000579518 119 ntBASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDDC3Q8N4P3 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 206.4 ms