Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 AC027307.2-201ENST00000591252 911 ntBASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 AC008267.7-201ENST00000624570 1194 ntBASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 AC084121.4-201ENST00000641598 221 ntBASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 AF228730.8-201ENST00000642140 221 ntBASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 KRT8P39-201ENST00000396270 1433 ntBASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 KRT8P23-201ENST00000560090 1207 ntBASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AP000842.3-202ENST00000569238 1080 ntBASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AC005915.1-201ENST00000624912 2018 ntBASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC60Q8IWA6 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 SLC25A39P2-201ENST00000537614 270 ntBASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC60Q8IWA6 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC60Q8IWA6 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms