Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 TSPY19P-201ENST00000418461 509 ntBASIC19.17■□□□□ 0.66
ATL3Q6DD88 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 TSPY18P-201ENST00000441642 509 ntBASIC19.17■□□□□ 0.66
ATL3Q6DD88 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 SLC25A6P2-201ENST00000497974 877 ntBASIC19.17■□□□□ 0.66
ATL3Q6DD88 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 MIR3652-201ENST00000579335 131 ntBASIC19.17■□□□□ 0.66
ATL3Q6DD88 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 AC006557.2-201ENST00000592985 1240 ntBASIC19.17■□□□□ 0.66
ATL3Q6DD88 CYP2A7P1-201ENST00000595391 815 ntBASIC19.17■□□□□ 0.66
ATL3Q6DD88 AC008608.2-201ENST00000606089 416 ntBASIC19.17■□□□□ 0.66
ATL3Q6DD88 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.17■□□□□ 0.66
ATL3Q6DD88 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATL3Q6DD88 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 GPAA1P2-202ENST00000606848 1787 ntBASIC19.16■□□□□ 0.66
ATL3Q6DD88 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 LAGE3P1-201ENST00000425356 484 ntBASIC19.16■□□□□ 0.66
ATL3Q6DD88 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 GGTLC5P-201ENST00000617623 998 ntBASIC19.16■□□□□ 0.66
ATL3Q6DD88 REXO1L6P-202ENST00000619970 1078 ntBASIC19.16■□□□□ 0.66
ATL3Q6DD88 AC093458.2-201ENST00000623150 629 ntBASIC19.16■□□□□ 0.66
ATL3Q6DD88 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 SLC22A20-204ENST00000530038 1673 ntBASIC19.16■□□□□ 0.66
ATL3Q6DD88 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 AC129492.6-201ENST00000611383 1305 ntBASIC19.16■□□□□ 0.66
ATL3Q6DD88 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATL3Q6DD88 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ATL3Q6DD88 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms