Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC091812.2-201ENST00000619081 385 ntBASIC15.56■□□□□ 0.08
RNF4P78317 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 LINC00895-201ENST00000629028 1637 ntBASIC15.56■□□□□ 0.08
RNF4P78317 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
RNF4P78317 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.55■□□□□ 0.08
RNF4P78317 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.55■□□□□ 0.08
RNF4P78317 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
RNF4P78317 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
RNF4P78317 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.55■□□□□ 0.08
RNF4P78317 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
RNF4P78317 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 HTR5BP-201ENST00000430851 1154 ntBASIC15.55■□□□□ 0.08
RNF4P78317 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.55■□□□□ 0.08
RNF4P78317 AC112191.1-201ENST00000523689 701 ntBASIC15.55■□□□□ 0.08
RNF4P78317 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
RNF4P78317 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RNF4P78317 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
RNF4P78317 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
RNF4P78317 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.55■□□□□ 0.08
RNF4P78317 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RNF4P78317 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.54■□□□□ 0.08
RNF4P78317 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
RNF4P78317 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.54■□□□□ 0.08
RNF4P78317 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
RNF4P78317 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.54■□□□□ 0.08
RNF4P78317 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 AC002056.1-201ENST00000395613 760 ntBASIC15.54■□□□□ 0.08
RNF4P78317 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.54■□□□□ 0.08
RNF4P78317 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.54■□□□□ 0.08
RNF4P78317 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.54■□□□□ 0.08
RNF4P78317 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.54■□□□□ 0.08
RNF4P78317 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.54■□□□□ 0.08
RNF4P78317 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.54■□□□□ 0.08
RNF4P78317 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.54■□□□□ 0.08
RNF4P78317 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.54■□□□□ 0.08
RNF4P78317 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.54■□□□□ 0.08
RNF4P78317 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.54■□□□□ 0.08
RNF4P78317 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 PKD1P5-201ENST00000532415 10291 ntBASIC15.54■□□□□ 0.08
RNF4P78317 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
RNF4P78317 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
RNF4P78317 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms