Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
FOXA1P55317 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
FOXA1P55317 RBM17P3-201ENST00000417687 1192 ntBASIC16.3■□□□□ 0.2
FOXA1P55317 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
FOXA1P55317 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
FOXA1P55317 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.3■□□□□ 0.2
FOXA1P55317 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
FOXA1P55317 AL589182.2-201ENST00000619332 1049 ntBASIC16.3■□□□□ 0.2
FOXA1P55317 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
FOXA1P55317 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXA1P55317 AL139011.1-202ENST00000642063 584 ntBASIC16.3■□□□□ 0.2
FOXA1P55317 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA1P55317 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
FOXA1P55317 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXA1P55317 AL512652.2-201ENST00000625156 1716 ntBASIC16.3■□□□□ 0.2
FOXA1P55317 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA1P55317 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXA1P55317 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA1P55317 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA1P55317 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA1P55317 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXA1P55317 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
FOXA1P55317 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA1P55317 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
FOXA1P55317 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA1P55317 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA1P55317 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
FOXA1P55317 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.29■□□□□ 0.2
FOXA1P55317 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXA1P55317 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.29■□□□□ 0.2
FOXA1P55317 AL355877.3-201ENST00000622820 899 ntBASIC16.29■□□□□ 0.2
FOXA1P55317 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.29■□□□□ 0.2
FOXA1P55317 GGT3P-204ENST00000453783 1664 ntBASIC16.29■□□□□ 0.2
FOXA1P55317 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
FOXA1P55317 MTHFR-217ENST00000641820 1569 ntBASIC16.29■□□□□ 0.2
FOXA1P55317 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXA1P55317 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA1P55317 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXA1P55317 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXA1P55317 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
FOXA1P55317 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
FOXA1P55317 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.28■□□□□ 0.2
FOXA1P55317 FGFR3P6-201ENST00000457012 610 ntBASIC16.28■□□□□ 0.2
FOXA1P55317 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.28■□□□□ 0.2
FOXA1P55317 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXA1P55317 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.28■□□□□ 0.2
FOXA1P55317 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXA1P55317 REXO1L3P-201ENST00000622202 1288 ntBASIC16.28■□□□□ 0.2
FOXA1P55317 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
FOXA1P55317 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA1P55317 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA1P55317 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms