Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH6P52701 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 BRWD1P1-201ENST00000401091 371 ntBASIC22.99■■□□□ 1.27
MSH6P52701 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH6P52701 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC22.99■■□□□ 1.27
MSH6P52701 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 FADS2-205ENST00000517839 469 ntTSL 3 BASIC22.99■■□□□ 1.27
MSH6P52701 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH6P52701 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH6P52701 PIGL-212ENST00000581006 554 ntTSL 4 BASIC22.99■■□□□ 1.27
MSH6P52701 MIR8072-201ENST00000614241 80 ntBASIC22.99■■□□□ 1.27
MSH6P52701 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH6P52701 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
MSH6P52701 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 KRT8P12-202ENST00000472924 1397 ntBASIC22.98■■□□□ 1.27
MSH6P52701 AC018665.1-201ENST00000622927 1362 ntBASIC22.98■■□□□ 1.27
MSH6P52701 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC22.98■■□□□ 1.27
MSH6P52701 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC22.98■■□□□ 1.27
MSH6P52701 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
MSH6P52701 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC22.98■■□□□ 1.27
MSH6P52701 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC22.98■■□□□ 1.27
MSH6P52701 CTBP2P5-201ENST00000454986 1264 ntBASIC22.98■■□□□ 1.27
MSH6P52701 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC22.98■■□□□ 1.27
MSH6P52701 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC22.98■■□□□ 1.27
MSH6P52701 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
MSH6P52701 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
MSH6P52701 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
MSH6P52701 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
MSH6P52701 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC22.98■■□□□ 1.27
MSH6P52701 AC135050.7-201ENST00000624508 2218 ntBASIC22.98■■□□□ 1.27
MSH6P52701 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH6P52701 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
MSH6P52701 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC22.97■■□□□ 1.27
MSH6P52701 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
MSH6P52701 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 NSL1-201ENST00000366976 722 ntTSL 2 BASIC22.97■■□□□ 1.27
MSH6P52701 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC22.97■■□□□ 1.27
MSH6P52701 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
MSH6P52701 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC22.97■■□□□ 1.27
MSH6P52701 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC22.97■■□□□ 1.27
MSH6P52701 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
MSH6P52701 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 RNF165-205ENST00000588679 2904 ntBASIC22.97■■□□□ 1.27
MSH6P52701 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH6P52701 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC22.97■■□□□ 1.27
MSH6P52701 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
MSH6P52701 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC22.96■■□□□ 1.27
MSH6P52701 IMPDH1P4-201ENST00000445028 1534 ntBASIC22.96■■□□□ 1.27
MSH6P52701 PDIA3P1-201ENST00000471856 1510 ntBASIC22.96■■□□□ 1.27
MSH6P52701 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC22.96■■□□□ 1.27
MSH6P52701 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH6P52701 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH6P52701 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH6P52701 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC22.96■■□□□ 1.27
MSH6P52701 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
MSH6P52701 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH6P52701 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
MSH6P52701 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC22.96■■□□□ 1.27
MSH6P52701 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC22.96■■□□□ 1.27
MSH6P52701 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC22.96■■□□□ 1.27
MSH6P52701 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC22.96■■□□□ 1.27
MSH6P52701 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC22.96■■□□□ 1.27
MSH6P52701 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC22.96■■□□□ 1.27
MSH6P52701 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC22.96■■□□□ 1.27
MSH6P52701 NAA38-207ENST00000576861 556 ntTSL 3 BASIC22.96■■□□□ 1.27
MSH6P52701 AC233724.13-201ENST00000598383 410 ntBASIC22.96■■□□□ 1.27
MSH6P52701 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC22.96■■□□□ 1.27
MSH6P52701 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC22.96■■□□□ 1.27
MSH6P52701 RPSAP52-203ENST00000622976 1023 ntBASIC22.96■■□□□ 1.27
MSH6P52701 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
MSH6P52701 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH6P52701 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH6P52701 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
MSH6P52701 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC22.96■■□□□ 1.27
MSH6P52701 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
MSH6P52701 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC22.96■■□□□ 1.27
MSH6P52701 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms