Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.82□□□□□ -0.2
CDX1P47902 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDX1P47902 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CDX1P47902 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
CDX1P47902 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC13.81□□□□□ -0.2
CDX1P47902 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CDX1P47902 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.81□□□□□ -0.2
CDX1P47902 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CDX1P47902 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 AL138688.1-201ENST00000624851 1594 ntBASIC13.81□□□□□ -0.2
CDX1P47902 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 FAM220CP-201ENST00000395253 831 ntBASIC13.81□□□□□ -0.2
CDX1P47902 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 AC132008.2-207ENST00000454517 770 ntBASIC13.81□□□□□ -0.2
CDX1P47902 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC13.81□□□□□ -0.2
CDX1P47902 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC13.81□□□□□ -0.2
CDX1P47902 COX5A-202ENST00000562233 441 ntTSL 3 BASIC13.81□□□□□ -0.2
CDX1P47902 IRF8-202ENST00000562492 946 ntTSL 3 BASIC13.81□□□□□ -0.2
CDX1P47902 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC13.81□□□□□ -0.2
CDX1P47902 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC13.81□□□□□ -0.2
CDX1P47902 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.81□□□□□ -0.2
CDX1P47902 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC13.81□□□□□ -0.2
CDX1P47902 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CDX1P47902 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
CDX1P47902 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDX1P47902 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC13.8□□□□□ -0.2
CDX1P47902 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 RBM17P3-201ENST00000417687 1192 ntBASIC13.8□□□□□ -0.2
CDX1P47902 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC13.8□□□□□ -0.2
CDX1P47902 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC13.8□□□□□ -0.2
CDX1P47902 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 AC104692.2-201ENST00000603054 253 ntBASIC13.8□□□□□ -0.2
CDX1P47902 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 AC116407.2-201ENST00000613639 860 ntBASIC13.8□□□□□ -0.2
CDX1P47902 AL031008.1-201ENST00000619963 541 ntBASIC13.8□□□□□ -0.2
CDX1P47902 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.8□□□□□ -0.2
CDX1P47902 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDX1P47902 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CDX1P47902 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms