Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 AC105020.1-201ENST00000435356 2205 ntBASIC15.24■□□□□ 0.03
FREM3P0C091 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
FREM3P0C091 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.24■□□□□ 0.03
FREM3P0C091 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 AC023141.5-201ENST00000458585 616 ntBASIC15.24■□□□□ 0.03
FREM3P0C091 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.24■□□□□ 0.03
FREM3P0C091 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.24■□□□□ 0.03
FREM3P0C091 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.24■□□□□ 0.03
FREM3P0C091 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
FREM3P0C091 AL691403.2-201ENST00000618460 490 ntBASIC15.24■□□□□ 0.03
FREM3P0C091 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.24■□□□□ 0.03
FREM3P0C091 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 AKAP8P1-201ENST00000434743 1349 ntBASIC15.24■□□□□ 0.03
FREM3P0C091 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.24■□□□□ 0.03
FREM3P0C091 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
FREM3P0C091 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FREM3P0C091 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.24■□□□□ 0.03
FREM3P0C091 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.24■□□□□ 0.03
FREM3P0C091 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.24■□□□□ 0.03
FREM3P0C091 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
FREM3P0C091 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.23■□□□□ 0.03
FREM3P0C091 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.23■□□□□ 0.03
FREM3P0C091 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.23■□□□□ 0.03
FREM3P0C091 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.23■□□□□ 0.03
FREM3P0C091 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.23■□□□□ 0.03
FREM3P0C091 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
FREM3P0C091 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 AL353732.1-201ENST00000569618 1459 ntBASIC15.23■□□□□ 0.03
FREM3P0C091 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
FREM3P0C091 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FREM3P0C091 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
FREM3P0C091 AC012569.1-201ENST00000591191 1524 ntBASIC15.23■□□□□ 0.03
FREM3P0C091 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FREM3P0C091 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
FREM3P0C091 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
FREM3P0C091 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.23■□□□□ 0.03
FREM3P0C091 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.23■□□□□ 0.03
FREM3P0C091 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.23■□□□□ 0.03
FREM3P0C091 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.23■□□□□ 0.03
FREM3P0C091 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FREM3P0C091 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FREM3P0C091 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
FREM3P0C091 LINC02012-201ENST00000608206 1725 ntBASIC15.22■□□□□ 0.03
FREM3P0C091 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
FREM3P0C091 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.22■□□□□ 0.03
FREM3P0C091 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
FREM3P0C091 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
FREM3P0C091 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
FREM3P0C091 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 RNU1-129P-201ENST00000384064 167 ntBASIC15.22■□□□□ 0.03
FREM3P0C091 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.22■□□□□ 0.03
FREM3P0C091 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.22■□□□□ 0.03
FREM3P0C091 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.22■□□□□ 0.03
FREM3P0C091 CEND1P1-201ENST00000451006 455 ntBASIC15.22■□□□□ 0.03
FREM3P0C091 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.22■□□□□ 0.03
FREM3P0C091 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
FREM3P0C091 U1.21-201ENST00000580816 167 ntBASIC15.22■□□□□ 0.03
FREM3P0C091 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.22■□□□□ 0.03
FREM3P0C091 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms