Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
VIMP08670 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.96■□□□□ 0.31
VIMP08670 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.96■□□□□ 0.31
VIMP08670 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.96■□□□□ 0.31
VIMP08670 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.96■□□□□ 0.31
VIMP08670 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.96■□□□□ 0.31
VIMP08670 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.96■□□□□ 0.31
VIMP08670 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
VIMP08670 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.96■□□□□ 0.3
VIMP08670 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VIMP08670 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VIMP08670 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.96■□□□□ 0.3
VIMP08670 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
VIMP08670 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
VIMP08670 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VIMP08670 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
VIMP08670 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.95■□□□□ 0.3
VIMP08670 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VIMP08670 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VIMP08670 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.95■□□□□ 0.3
VIMP08670 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.95■□□□□ 0.3
VIMP08670 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
VIMP08670 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.95■□□□□ 0.3
VIMP08670 MTCL1P1-201ENST00000446207 792 ntBASIC16.95■□□□□ 0.3
VIMP08670 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.95■□□□□ 0.3
VIMP08670 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.95■□□□□ 0.3
VIMP08670 MIR4651-201ENST00000582622 73 ntBASIC16.95■□□□□ 0.3
VIMP08670 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.95■□□□□ 0.3
VIMP08670 AC019129.2-201ENST00000609837 1235 ntBASIC16.95■□□□□ 0.3
VIMP08670 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.95■□□□□ 0.3
VIMP08670 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VIMP08670 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.95■□□□□ 0.3
VIMP08670 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VIMP08670 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VIMP08670 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.95■□□□□ 0.3
VIMP08670 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
VIMP08670 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 TCAF2P1-201ENST00000291129 2421 ntBASIC16.94■□□□□ 0.3
VIMP08670 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.94■□□□□ 0.3
VIMP08670 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.94■□□□□ 0.3
VIMP08670 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 RPS2P55-201ENST00000397318 883 ntBASIC16.94■□□□□ 0.3
VIMP08670 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.94■□□□□ 0.3
VIMP08670 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.94■□□□□ 0.3
VIMP08670 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.94■□□□□ 0.3
VIMP08670 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.94■□□□□ 0.3
VIMP08670 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.94■□□□□ 0.3
VIMP08670 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.94■□□□□ 0.3
VIMP08670 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.94■□□□□ 0.3
VIMP08670 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms