Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.33■□□□□ 0.2
LDLRP01130 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.33■□□□□ 0.2
LDLRP01130 UPF3AP3-201ENST00000420996 769 ntBASIC16.33■□□□□ 0.2
LDLRP01130 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.33■□□□□ 0.2
LDLRP01130 AC098831.1-202ENST00000438821 336 ntBASIC16.33■□□□□ 0.2
LDLRP01130 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 AC113404.2-201ENST00000507884 177 ntBASIC16.33■□□□□ 0.2
LDLRP01130 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.33■□□□□ 0.2
LDLRP01130 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
LDLRP01130 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.33■□□□□ 0.2
LDLRP01130 AL353692.3-201ENST00000407031 1396 ntBASIC16.33■□□□□ 0.2
LDLRP01130 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.33■□□□□ 0.2
LDLRP01130 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.33■□□□□ 0.2
LDLRP01130 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.33■□□□□ 0.2
LDLRP01130 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
LDLRP01130 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.33■□□□□ 0.2
LDLRP01130 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
LDLRP01130 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.32■□□□□ 0.2
LDLRP01130 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.32■□□□□ 0.2
LDLRP01130 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.32■□□□□ 0.2
LDLRP01130 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.32■□□□□ 0.2
LDLRP01130 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.32■□□□□ 0.2
LDLRP01130 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.32■□□□□ 0.2
LDLRP01130 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.32■□□□□ 0.2
LDLRP01130 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.32■□□□□ 0.2
LDLRP01130 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.32■□□□□ 0.2
LDLRP01130 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.32■□□□□ 0.2
LDLRP01130 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.32■□□□□ 0.2
LDLRP01130 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.32■□□□□ 0.2
LDLRP01130 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.32■□□□□ 0.2
LDLRP01130 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.32■□□□□ 0.2
LDLRP01130 AP001160.2-201ENST00000596071 487 ntBASIC16.32■□□□□ 0.2
LDLRP01130 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.32■□□□□ 0.2
LDLRP01130 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.32■□□□□ 0.2
LDLRP01130 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.32■□□□□ 0.2
LDLRP01130 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.32■□□□□ 0.2
LDLRP01130 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 AC114341.1-201ENST00000618070 349 ntBASIC16.32■□□□□ 0.2
LDLRP01130 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.32■□□□□ 0.2
LDLRP01130 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 AC116407.3-201ENST00000623905 1129 ntBASIC16.32■□□□□ 0.2
LDLRP01130 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LDLRP01130 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
LDLRP01130 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDLRP01130 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LDLRP01130 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.32■□□□□ 0.2
LDLRP01130 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LDLRP01130 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LDLRP01130 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.31■□□□□ 0.2
LDLRP01130 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
LDLRP01130 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 AC022188.1-201ENST00000620960 1664 ntBASIC16.31■□□□□ 0.2
LDLRP01130 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.31■□□□□ 0.2
LDLRP01130 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.31■□□□□ 0.2
LDLRP01130 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 SLC25A1P3-201ENST00000395415 828 ntBASIC16.31■□□□□ 0.2
LDLRP01130 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LDLRP01130 AC132008.2-207ENST00000454517 770 ntBASIC16.31■□□□□ 0.2
LDLRP01130 SCARNA2-201ENST00000458748 420 ntBASIC16.31■□□□□ 0.2
LDLRP01130 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.31■□□□□ 0.2
LDLRP01130 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.31■□□□□ 0.2
LDLRP01130 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms