Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSX2IPQ9Y2D8 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX2IPQ9Y2D8 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX2IPQ9Y2D8 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX2IPQ9Y2D8 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSX2IPQ9Y2D8 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX2IPQ9Y2D8 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX2IPQ9Y2D8 LINC00304-203ENST00000565008 1864 ntBASIC18.12■□□□□ 0.49
SSX2IPQ9Y2D8 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 AL627223.1-201ENST00000416693 442 ntBASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 AC005237.2-201ENST00000434368 219 ntBASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX2IPQ9Y2D8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 TFAMP1-201ENST00000412727 736 ntBASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 SPCS2P1-201ENST00000561636 679 ntBASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 AC099522.2-201ENST00000607001 744 ntBASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SSX2IPQ9Y2D8 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX2IPQ9Y2D8 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.09■□□□□ 0.49
SSX2IPQ9Y2D8 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX2IPQ9Y2D8 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
SSX2IPQ9Y2D8 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.09■□□□□ 0.49
SSX2IPQ9Y2D8 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX2IPQ9Y2D8 LYSMD4-203ENST00000378904 2122 ntBASIC18.09■□□□□ 0.49
SSX2IPQ9Y2D8 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms