Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PRR29-204ENST00000577953 565 ntTSL 4 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 WT1-AS_2.1-201ENST00000613208 137 ntBASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 SNX12-206ENST00000622259 661 ntTSL 5 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 AL391825.1-201ENST00000457671 1364 ntBASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC31.68■■■□□ 2.66
SHROOM4Q9ULL8 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 AP006294.1-201ENST00000415407 339 ntBASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 AL353779.1-201ENST00000434793 351 ntBASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 AC119751.2-201ENST00000504529 210 ntBASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 AC004840.1-201ENST00000636359 365 ntBASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC31.67■■■□□ 2.66
SHROOM4Q9ULL8 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 MTRF1LP2-201ENST00000506027 1122 ntBASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 AC131009.4-201ENST00000624048 1740 ntBASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 MCC-208ENST00000514701 2855 ntTSL 2 BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC31.66■■■□□ 2.66
SHROOM4Q9ULL8 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 MPI-209ENST00000564003 1195 ntTSL 2 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 RARRES2P9-201ENST00000565168 469 ntBASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 MPDU1-223ENST00000582151 728 ntBASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 APOC4-201ENST00000591600 348 ntTSL 3 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 NKG7-205ENST00000600427 520 ntTSL 3 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 TEX28P1-201ENST00000613479 1221 ntBASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 TEX28P2-201ENST00000617764 1221 ntBASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHROOM4Q9ULL8 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC31.64■■■□□ 2.66
SHROOM4Q9ULL8 AC091167.2-201ENST00000579581 588 ntBASIC31.64■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms