Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CHMP1AQ9HD42 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CHMP1AQ9HD42 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.59□□□□□ -0.07
CHMP1AQ9HD42 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CHMP1AQ9HD42 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC14.59□□□□□ -0.07
CHMP1AQ9HD42 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC14.59□□□□□ -0.07
CHMP1AQ9HD42 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.59□□□□□ -0.07
CHMP1AQ9HD42 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.59□□□□□ -0.07
CHMP1AQ9HD42 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.59□□□□□ -0.07
CHMP1AQ9HD42 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CHMP1AQ9HD42 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
CHMP1AQ9HD42 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
CHMP1AQ9HD42 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.58□□□□□ -0.07
CHMP1AQ9HD42 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.58□□□□□ -0.07
CHMP1AQ9HD42 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CHMP1AQ9HD42 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.58□□□□□ -0.07
CHMP1AQ9HD42 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CHMP1AQ9HD42 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 CLN6-204ENST00000564752 900 ntTSL 3 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 AC124864.1-201ENST00000623408 392 ntBASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 CLN6-214ENST00000636314 442 ntTSL 3 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 AC097493.4-201ENST00000641197 219 ntBASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 AC092068.3-201ENST00000587894 2016 ntBASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14.58□□□□□ -0.08
CHMP1AQ9HD42 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 AL645929.1-201ENST00000420084 975 ntBASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 AC011840.4-201ENST00000578471 627 ntBASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 AC019129.2-201ENST00000609837 1235 ntBASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CHMP1AQ9HD42 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms