Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 MKNK2P1-201ENST00000437526 628 ntBASIC19.8■□□□□ 0.76
RNF41Q9H4P4 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 AC021097.1-201ENST00000607902 574 ntBASIC19.8■□□□□ 0.76
RNF41Q9H4P4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 AC023511.2-201ENST00000618803 211 ntBASIC19.8■□□□□ 0.76
RNF41Q9H4P4 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 AD000864.1-201ENST00000624076 2295 ntBASIC19.79■□□□□ 0.76
RNF41Q9H4P4 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 AL603756.1-201ENST00000606511 2163 ntBASIC19.79■□□□□ 0.76
RNF41Q9H4P4 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 KRT18P13-201ENST00000400056 1290 ntBASIC19.79■□□□□ 0.76
RNF41Q9H4P4 GPX1P2-201ENST00000429271 606 ntBASIC19.79■□□□□ 0.76
RNF41Q9H4P4 FAM58CP-201ENST00000435741 640 ntBASIC19.79■□□□□ 0.76
RNF41Q9H4P4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 AC091812.2-201ENST00000619081 385 ntBASIC19.79■□□□□ 0.76
RNF41Q9H4P4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 AC078925.2-201ENST00000624013 1973 ntBASIC19.79■□□□□ 0.76
RNF41Q9H4P4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF41Q9H4P4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 AL671710.1-201ENST00000610245 2349 ntBASIC19.78■□□□□ 0.76
RNF41Q9H4P4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 UPF3AP3-201ENST00000420996 769 ntBASIC19.78■□□□□ 0.76
RNF41Q9H4P4 ACTG1P14-201ENST00000446382 1122 ntBASIC19.78■□□□□ 0.76
RNF41Q9H4P4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF41Q9H4P4 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms