Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 TPRX2P-201ENST00000535362 881 ntBASIC16.4■□□□□ 0.22
VPS13AQ96RL7 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 LINC00304-203ENST00000565008 1864 ntBASIC16.4■□□□□ 0.22
VPS13AQ96RL7 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 AC005229.1-201ENST00000392885 409 ntBASIC16.4■□□□□ 0.22
VPS13AQ96RL7 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 PRYP6-201ENST00000514804 343 ntBASIC16.39■□□□□ 0.21
VPS13AQ96RL7 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 ACTG1P17-201ENST00000558391 1119 ntBASIC16.39■□□□□ 0.21
VPS13AQ96RL7 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 AC120498.9-201ENST00000339021 3867 ntBASIC16.39■□□□□ 0.21
VPS13AQ96RL7 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS13AQ96RL7 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 AC114501.2-201ENST00000439631 535 ntBASIC16.38■□□□□ 0.21
VPS13AQ96RL7 AC253536.4-201ENST00000440539 267 ntBASIC16.38■□□□□ 0.21
VPS13AQ96RL7 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 AC092978.1-202ENST00000637590 1327 ntBASIC16.38■□□□□ 0.21
VPS13AQ96RL7 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 BTBD6P1-201ENST00000412176 1267 ntBASIC16.38■□□□□ 0.21
VPS13AQ96RL7 KRT18P34-201ENST00000488218 1270 ntBASIC16.38■□□□□ 0.21
VPS13AQ96RL7 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms