Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.25■□□□□ 0.35
RTL3Q8N8U3 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.24■□□□□ 0.35
RTL3Q8N8U3 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.24■□□□□ 0.35
RTL3Q8N8U3 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 PDPK2P-202ENST00000562415 1191 ntBASIC17.24■□□□□ 0.35
RTL3Q8N8U3 AC040169.1-201ENST00000565382 521 ntBASIC17.24■□□□□ 0.35
RTL3Q8N8U3 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 AL513190.1-201ENST00000621254 727 ntBASIC17.24■□□□□ 0.35
RTL3Q8N8U3 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 AC092865.6-201ENST00000642101 219 ntBASIC17.24■□□□□ 0.35
RTL3Q8N8U3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RTL3Q8N8U3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 AC009053.2-201ENST00000563701 2365 ntBASIC17.23■□□□□ 0.35
RTL3Q8N8U3 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 AL671710.1-201ENST00000610245 2349 ntBASIC17.23■□□□□ 0.35
RTL3Q8N8U3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 HLA-J-202ENST00000469281 1241 ntBASIC17.23■□□□□ 0.35
RTL3Q8N8U3 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 FLJ38576-201ENST00000623820 2459 ntBASIC17.23■□□□□ 0.35
RTL3Q8N8U3 AC011676.5-201ENST00000624864 2660 ntBASIC17.23■□□□□ 0.35
RTL3Q8N8U3 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RTL3Q8N8U3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RTL3Q8N8U3 PMS2P7-201ENST00000506558 1336 ntBASIC17.22■□□□□ 0.35
RTL3Q8N8U3 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms