Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AC061975.2-201ENST00000581722 295 ntBASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AL021578.1-201ENST00000613646 709 ntBASIC17.54■□□□□ 0.4
CHD9Q3L8U1 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AC098859.1-201ENST00000502915 1238 ntBASIC17.54■□□□□ 0.4
CHD9Q3L8U1 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AC123567.1-201ENST00000548294 1261 ntBASIC17.54■□□□□ 0.4
CHD9Q3L8U1 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 RETN-203ENST00000629642 400 ntTSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AL033527.5-201ENST00000641382 801 ntBASIC17.54■□□□□ 0.4
CHD9Q3L8U1 KRT8P49-201ENST00000604166 1432 ntBASIC17.53■□□□□ 0.4
CHD9Q3L8U1 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.53■□□□□ 0.4
CHD9Q3L8U1 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.53■□□□□ 0.4
CHD9Q3L8U1 AC243960.2-201ENST00000600996 747 ntBASIC17.53■□□□□ 0.4
CHD9Q3L8U1 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 BRWD1P1-201ENST00000401091 371 ntBASIC17.52■□□□□ 0.4
CHD9Q3L8U1 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 RPL7P3-201ENST00000441388 714 ntBASIC17.52■□□□□ 0.4
CHD9Q3L8U1 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 AC004461.2-201ENST00000629517 803 ntBASIC17.52■□□□□ 0.4
CHD9Q3L8U1 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.52■□□□□ 0.4
CHD9Q3L8U1 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 SPDYE17-201ENST00000412399 783 ntBASIC17.52■□□□□ 0.39
CHD9Q3L8U1 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 SERBP1P3-201ENST00000459980 809 ntBASIC17.52■□□□□ 0.39
CHD9Q3L8U1 SDHAP3-202ENST00000515467 728 ntBASIC17.52■□□□□ 0.39
CHD9Q3L8U1 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 RRP7BP-205ENST00000566851 833 ntBASIC17.52■□□□□ 0.39
CHD9Q3L8U1 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 NAT9-224ENST00000583757 583 ntTSL 3 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHD9Q3L8U1 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms