Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SF3A1Q15459 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SF3A1Q15459 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
SF3A1Q15459 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.49■□□□□ 0.71
SF3A1Q15459 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.49■□□□□ 0.71
SF3A1Q15459 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.49■□□□□ 0.71
SF3A1Q15459 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.49■□□□□ 0.71
SF3A1Q15459 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 AP002414.1-201ENST00000391405 1147 ntBASIC19.49■□□□□ 0.71
SF3A1Q15459 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
SF3A1Q15459 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.49■□□□□ 0.71
SF3A1Q15459 RBM17P3-201ENST00000417687 1192 ntBASIC19.49■□□□□ 0.71
SF3A1Q15459 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.49■□□□□ 0.71
SF3A1Q15459 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.49■□□□□ 0.71
SF3A1Q15459 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.49■□□□□ 0.71
SF3A1Q15459 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.49■□□□□ 0.71
SF3A1Q15459 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.49■□□□□ 0.71
SF3A1Q15459 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.49■□□□□ 0.71
SF3A1Q15459 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.49■□□□□ 0.71
SF3A1Q15459 MTDHP3-201ENST00000594186 672 ntBASIC19.49■□□□□ 0.71
SF3A1Q15459 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SF3A1Q15459 AL022326.1-202ENST00000641533 845 ntBASIC19.49■□□□□ 0.71
SF3A1Q15459 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
SF3A1Q15459 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SF3A1Q15459 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SF3A1Q15459 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
SF3A1Q15459 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC19.48■□□□□ 0.71
SF3A1Q15459 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SF3A1Q15459 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.48■□□□□ 0.71
SF3A1Q15459 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.48■□□□□ 0.71
SF3A1Q15459 TSPY19P-201ENST00000418461 509 ntBASIC19.48■□□□□ 0.71
SF3A1Q15459 TSPY18P-201ENST00000441642 509 ntBASIC19.48■□□□□ 0.71
SF3A1Q15459 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.48■□□□□ 0.71
SF3A1Q15459 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.48■□□□□ 0.71
SF3A1Q15459 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 AL121772.3-201ENST00000610840 674 ntBASIC19.48■□□□□ 0.71
SF3A1Q15459 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.48■□□□□ 0.71
SF3A1Q15459 AL356309.3-201ENST00000624132 1934 ntBASIC19.48■□□□□ 0.71
SF3A1Q15459 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.48■□□□□ 0.71
SF3A1Q15459 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
SF3A1Q15459 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SF3A1Q15459 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SF3A1Q15459 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.48■□□□□ 0.71
SF3A1Q15459 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SF3A1Q15459 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.48■□□□□ 0.71
SF3A1Q15459 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.47■□□□□ 0.71
SF3A1Q15459 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SF3A1Q15459 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SF3A1Q15459 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SF3A1Q15459 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SF3A1Q15459 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.47■□□□□ 0.71
SF3A1Q15459 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SF3A1Q15459 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SF3A1Q15459 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SF3A1Q15459 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.47■□□□□ 0.71
SF3A1Q15459 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.47■□□□□ 0.71
SF3A1Q15459 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.47■□□□□ 0.71
SF3A1Q15459 AL139288.1-201ENST00000623748 933 ntBASIC19.47■□□□□ 0.71
SF3A1Q15459 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.47■□□□□ 0.71
SF3A1Q15459 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
SF3A1Q15459 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SF3A1Q15459 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SF3A1Q15459 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.47■□□□□ 0.71
SF3A1Q15459 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SF3A1Q15459 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.47■□□□□ 0.71
SF3A1Q15459 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SF3A1Q15459 DOC2GP-204ENST00000639052 2548 ntBASIC19.47■□□□□ 0.71
SF3A1Q15459 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms