Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA3P55318 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA3P55318 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
FOXA3P55318 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA3P55318 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA3P55318 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.7□□□□□ -0.38
FOXA3P55318 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
FOXA3P55318 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 TUBB8P12-201ENST00000308911 1335 ntBASIC12.7□□□□□ -0.38
FOXA3P55318 TUBB7P-202ENST00000428444 1305 ntBASIC12.7□□□□□ -0.38
FOXA3P55318 TUBB8P7-204ENST00000567960 1332 ntBASIC12.7□□□□□ -0.38
FOXA3P55318 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
FOXA3P55318 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC12.7□□□□□ -0.38
FOXA3P55318 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.7□□□□□ -0.38
FOXA3P55318 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC12.7□□□□□ -0.38
FOXA3P55318 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 TSPY12P-201ENST00000421279 868 ntBASIC12.7□□□□□ -0.38
FOXA3P55318 HLA-J-202ENST00000469281 1241 ntBASIC12.7□□□□□ -0.38
FOXA3P55318 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA3P55318 IGHV3-52-201ENST00000519770 353 ntBASIC12.7□□□□□ -0.38
FOXA3P55318 TK1-205ENST00000590862 642 ntTSL 3 BASIC12.7□□□□□ -0.38
FOXA3P55318 FAM197Y4-202ENST00000622692 608 ntBASIC12.7□□□□□ -0.38
FOXA3P55318 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC12.7□□□□□ -0.38
FOXA3P55318 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
FOXA3P55318 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
FOXA3P55318 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA3P55318 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA3P55318 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
FOXA3P55318 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
FOXA3P55318 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
FOXA3P55318 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 DDT-203ENST00000403754 569 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA3P55318 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC12.69□□□□□ -0.38
FOXA3P55318 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 DDT-206ENST00000430101 573 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA3P55318 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA3P55318 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA3P55318 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA3P55318 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 OR2I1P-210ENST00000642037 4691 ntBASIC12.69□□□□□ -0.38
FOXA3P55318 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.69□□□□□ -0.38
FOXA3P55318 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
FOXA3P55318 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC12.69□□□□□ -0.38
FOXA3P55318 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA3P55318 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms