Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COPAP53621 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.42■□□□□ 0.38
COPAP53621 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COPAP53621 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COPAP53621 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.42■□□□□ 0.38
COPAP53621 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.41■□□□□ 0.38
COPAP53621 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.41■□□□□ 0.38
COPAP53621 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
COPAP53621 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.41■□□□□ 0.38
COPAP53621 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.41■□□□□ 0.38
COPAP53621 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 HTR5BP-201ENST00000430851 1154 ntBASIC17.41■□□□□ 0.38
COPAP53621 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 KRT19P2-202ENST00000557173 1012 ntBASIC17.41■□□□□ 0.38
COPAP53621 AL078644.1-201ENST00000609881 752 ntBASIC17.41■□□□□ 0.38
COPAP53621 AL596442.2-201ENST00000610240 980 ntBASIC17.41■□□□□ 0.38
COPAP53621 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.41■□□□□ 0.38
COPAP53621 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COPAP53621 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COPAP53621 BCAR1-209ENST00000546196 1340 ntBASIC17.41■□□□□ 0.38
COPAP53621 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COPAP53621 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COPAP53621 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.4■□□□□ 0.38
COPAP53621 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 PCDHB19P-201ENST00000570871 2371 ntBASIC17.4■□□□□ 0.38
COPAP53621 AC046158.3-201ENST00000624947 2558 ntBASIC17.4■□□□□ 0.38
COPAP53621 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
COPAP53621 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
COPAP53621 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COPAP53621 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
COPAP53621 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.4■□□□□ 0.38
COPAP53621 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COPAP53621 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.4■□□□□ 0.38
COPAP53621 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.4■□□□□ 0.38
COPAP53621 MKNK2P1-201ENST00000437526 628 ntBASIC17.4■□□□□ 0.38
COPAP53621 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.4■□□□□ 0.38
COPAP53621 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.4■□□□□ 0.38
COPAP53621 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.4■□□□□ 0.38
COPAP53621 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
COPAP53621 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.4■□□□□ 0.38
COPAP53621 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.4■□□□□ 0.38
COPAP53621 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
COPAP53621 AC106886.4-201ENST00000623557 2502 ntBASIC17.4■□□□□ 0.38
COPAP53621 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COPAP53621 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.39■□□□□ 0.38
COPAP53621 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
COPAP53621 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.39■□□□□ 0.37
COPAP53621 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
COPAP53621 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
COPAP53621 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
COPAP53621 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.39■□□□□ 0.37
COPAP53621 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.39■□□□□ 0.37
COPAP53621 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.39■□□□□ 0.37
COPAP53621 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.39■□□□□ 0.37
COPAP53621 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
COPAP53621 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.39■□□□□ 0.37
COPAP53621 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.39■□□□□ 0.37
COPAP53621 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
COPAP53621 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COPAP53621 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms