Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.9■□□□□ 0.62
CIITAP33076 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.9■□□□□ 0.62
CIITAP33076 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CIITAP33076 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CIITAP33076 FAM86C2P-203ENST00000528684 1004 ntBASIC18.9■□□□□ 0.62
CIITAP33076 RARRES2P8-201ENST00000566335 367 ntBASIC18.9■□□□□ 0.62
CIITAP33076 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CIITAP33076 AC105339.1-204ENST00000636249 355 ntBASIC18.9■□□□□ 0.62
CIITAP33076 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.9■□□□□ 0.62
CIITAP33076 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CIITAP33076 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
CIITAP33076 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CIITAP33076 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.9■□□□□ 0.62
CIITAP33076 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.9■□□□□ 0.62
CIITAP33076 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.9■□□□□ 0.62
CIITAP33076 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.9■□□□□ 0.62
CIITAP33076 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
CIITAP33076 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CIITAP33076 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.89■□□□□ 0.62
CIITAP33076 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.89■□□□□ 0.62
CIITAP33076 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
CIITAP33076 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CIITAP33076 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.89■□□□□ 0.61
CIITAP33076 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CIITAP33076 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
CIITAP33076 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.89■□□□□ 0.61
CIITAP33076 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.89■□□□□ 0.61
CIITAP33076 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CIITAP33076 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.89■□□□□ 0.61
CIITAP33076 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.89■□□□□ 0.61
CIITAP33076 AL513210.1-201ENST00000629608 234 ntBASIC18.89■□□□□ 0.61
CIITAP33076 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 WASH6P-202ENST00000359512 1437 ntBASIC18.89■□□□□ 0.61
CIITAP33076 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.89■□□□□ 0.61
CIITAP33076 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.89■□□□□ 0.61
CIITAP33076 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CIITAP33076 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CIITAP33076 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CIITAP33076 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.89■□□□□ 0.61
CIITAP33076 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CIITAP33076 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CIITAP33076 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 TFAMP1-201ENST00000412727 736 ntBASIC18.88■□□□□ 0.61
CIITAP33076 AC254562.1-201ENST00000417586 456 ntBASIC18.88■□□□□ 0.61
CIITAP33076 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.88■□□□□ 0.61
CIITAP33076 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.88■□□□□ 0.61
CIITAP33076 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.88■□□□□ 0.61
CIITAP33076 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.88■□□□□ 0.61
CIITAP33076 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.88■□□□□ 0.61
CIITAP33076 AC026120.1-201ENST00000611536 926 ntBASIC18.88■□□□□ 0.61
CIITAP33076 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CIITAP33076 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CIITAP33076 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.88■□□□□ 0.61
CIITAP33076 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.88■□□□□ 0.61
CIITAP33076 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.88■□□□□ 0.61
CIITAP33076 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CIITAP33076 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CIITAP33076 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.87■□□□□ 0.61
CIITAP33076 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CIITAP33076 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
CIITAP33076 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms